Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01293 ATGCTCAAAGAAGGTAACGGCAATGGCGTCGCCAGTAATAACAGCTGGGCACGTATCTGTGACACGTGCCGCTCTGCTCCCTGCACTGTTTACTGCCGCGCTGACATGGCTTACCTCTGCACCGGCTGCGACTCCCGCATCCACGCCGCCAACCGCGTCGCATCCCGCCACGAGCGCGTCTGGGTTTGTGAGTCTTGTGAGCGCGCCCCCGCCGCGTTTCTCTGCAAGGCCGACGCCGCCTCCCTCTGCTCCGCATGCGACGCCGACATCCACTCCGCCAACCCCCTTGCCAGTCGTCACCACCGTGTCCCCATTCTCCCCTTTTACGGGCCTCCTTCCTCCGCGGGCTCTGCTCCTGACGGGGATGATGGTTTTCTAGCTCACGGGGGCGATGATGCGGAGGAGGAGGAGGTTGTCGACGAAGATGATGAAGACGAGGCCGCCTCGTGGTTGTTGCTGAATCCTGTGAAGAACAACAACCACAGTTCCAACAACAACAATCAAAGCAACGGTTTTTTGTTTGGTTCTGGGGAGGCTGATGATTATTTGGACCTCATGGATTGCAACTCATGTGCTGAAAATCCGTTGACCGATCATTACAATCAGCAGCAACATTATGATGTTCCTCAGAAGAACTATGCCGGCGACAGTGTCGTTCCGGTTCAGCAGCAGCAGCAACAGCATTTTCAGTTGGGTTTGGAGTTTGATTCGTCAAAATCTGGCTACAGTGTTTTCAACGGTTCTGTCACTCAAAATGTTTCGATTTCGTCAATCGATGTTGGGATTGTACCGGAATCAACTATCAGCGATGGCTCGATTTCCCATTCAAGACCTCCAAAAGGGACCATTGACCTATTTTCCGGGCCTCCAATTCAGATACCTTTGCAGCTTAGTCCGATGGACAGGGAGGCCAGAGTTTTAAGATACAGAGAGAAGAAGAAGACAAGAAAGTTTGAGAAGACAATAAGGTATGCCTCTAGGAAGGCATATGCAGAGACAAGACCTCGTATCAAAGGTCGATTCGCAAAGAGAACAGAGGTGGAAGCTGAAGTAGACCAGATGTTCTCTACTTCTCTAATGACCAAAACTGGATATGGCATTGTTCCTTCTTTCTGA 1116 0.5179 MLKEGNGNGVASNNSWARICDTCRSAPCTVYCRADMAYLCTGCDSRIHAANRVASRHERVWVCESCERAPAAFLCKADAASLCSACDADIHSANPLASRHHRVPILPFYGPPSSAGSAPDGDDGFLAHGGDDAEEEEVVDEDDEDEAASWLLLNPVKNNNHSSNNNNQSNGFLFGSGEADDYLDLMDCNSCAENPLTDHYNQQQHYDVPQKNYAGDSVVPVQQQQQQHFQLGLEFDSSKSGYSVFNGSVTQNVSISSIDVGIVPESTISDGSISHSRPPKGTIDLFSGPPIQIPLQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEAEVDQMFSTSLMTKTGYGIVPSF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01293 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 359 IPR045281 GO:0009909
Accr5g01293 371 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Accr5g01293 371 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Accr5g01293 371 Pfam CCT motif 302 344 IPR010402 GO:0005515
Accr5g01293 371 CDD Bbox1_BBX-like 19 62 - -
Accr5g01293 371 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Accr5g01293 371 SMART bboxneu5 15 62 IPR000315 GO:0008270
Accr5g01293 371 SMART bboxneu5 63 105 IPR000315 GO:0008270
Accr5g01293 371 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Accr5g01293 371 MobiDBLite consensus disorder prediction 110 136 - -
Accr5g01293 371 CDD Bbox1_BBX-like 62 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01293 Accr-Chr5 38807753 38809465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01293 1 371 C2C2-CO-like Transcription Factor Family AT3G02380 59.481 3.20e-140 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Accr5g01293 zf-B_box 5.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01293 K12135 - qsa:O6P43_009228 501.516