LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g01292	ATGGAGACTCCATTCTCTAGAACTCGTGTCTGCTTTCTAGGACATTACAATTGTATGGGGAAACTAAGAGAAGCTGTTCTTTGTTTTGCGGTACTACTTTGGTTTTGGGGTTCTGCAAATGCTGTTCTTTCTCCTAAAGGAGTGAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGCTTCTCTGCGGGATCCTCATGGTGTCTTAGATAATTGGGATGCGGATGCAGTTGACCCTTGTAGCTGGACTATGGTCACCTGTTCGCCGGACACCTCTGTCATTGGCCTGGGTACTCCCAGTCAAAGTCTATCAGGTACTCTGTCTCCAAGCATAGGCAACCTAACGAACCTTCAGATTGTTTTGCTACAGAATAATAATATAACAGGTCCAATACCTTCAGAGCTGGGCAGGCTTTCAAATCTTCATACACTTGATCTCTCTAATAACTTATTCAATGGGGAAATTCCTTCCTCTCTCGGTCACTTGAGAAGCCTCCAATACTTGAGGCTCAACAATAACAGTCTTTCTGGAGATTGTCCAGAGCCACTCGCTAACATGACAGAGCTTGCTTTTCTTGACTTGTCCTATAACAACCTCAGTGGCCCTATGCCCAGAATTCTGGCCAAATCATTCAATATTGTCGGAAACTCTCTCGTCTGTGGTAGGGGTAAAGAGACAAAATGCCATGGCATGACGACATTGATGCCCATGTCCATGAACTTGAACACTACAGAGGATGCTATACCATCAGGCAAAACAAAATCACGCAAAATGGCCATTGCCTTTGGCTTAAGTCTAGGATGCCTCTGCTTGATAGTTCTTGGTTTTGGGCTATTTCTATGGTGGAGGCACAAGCATAACCAACAGACATTTTTTGACGTCAAAGACCGGTGTCATGAAGAAGTTTACCTTGGAAACCTGAAGAGATTCCAATTCAGAGAACTCCAGATAGCTACACACAACTTCAGCAACAAGAACATTCTGGGAAAGGGTGGCTTTGGAAACGTGTACAAAGGAGTGCTCTCAGATGGAACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATAGGAGGAGAGATCCAGTTTCAGACTGAAGTTGAAATGATTAGCTTGGCAGTGCATCGAAACCTCCTCAGACTCTACGGATTCTGCATGACACCAACCGAAAGGCTTCTGGTTTACCCTTACATGTCTAATGGCAGTGTTGCTTCCCGTCTCAAGACTAAACCAGTGTTAGACTGGGGCACTAGGAAGCAAATTGCCTTGGGGGCAGCCAGGGGACTATTATACCTTCATGAGCAGTGTGATCCAAAGATAATTCATAGGGATGTGAAAGCTGCAAACATATTGCTTGATGACTATTGTGAGGCTGTGGTTGGAGATTTCGGGTTGGCAAAGCTTTTGGATCATCAAGATTCACATGTTACAACTGCTGTGAGAGGCACTGTAGGGCATATTGCCCCAGAGTATCTCTCCACAGGGCAATCCTCTGAGAAAACTGATGTCTTCGGATTTGGCATTCTCCTCCTTGAACTGATCACAGGCCAGAGGGCTCTAGAATTTGGAAAGGCTGCAAACCAGAAAGGAGCCATGCTAGATTGGGTGAAGAAAATTCATCAGGAGAAGAAGTTAGAGCTGTTCGTGGACAAGGATCTGAAGAACAACTATGACAGGATTGAGCTGGAAGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAGTACCTTCCTGGTCTGAGGCCAAAAATGTCAGAAGTAGTAAGGATGCTTGAAGGAGATGGATTGGCAGAAAGATGGGAAGCTTCTCAGAGAGCTGATATGAGCAAGTGCAAGGCTCCTGAGTTGTCTTCTTCTGATCGATATTCTGATCTCACTGATGACTCTTCCATGCAAGTCCAGGCCATGGAACTTTCAGGCCCGAGGTGA	1929	0.4515	METPFSRTRVCFLGHYNCMGKLREAVLCFAVLLWFWGSANAVLSPKGVNFEVQALMGIKASLRDPHGVLDNWDADAVDPCSWTMVTCSPDTSVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNITGPIPSELGRLSNLHTLDLSNNLFNGEIPSSLGHLRSLQYLRLNNNSLSGDCPEPLANMTELAFLDLSYNNLSGPMPRILAKSFNIVGNSLVCGRGKETKCHGMTTLMPMSMNLNTTEDAIPSGKTKSRKMAIAFGLSLGCLCLIVLGFGLFLWWRHKHNQQTFFDVKDRCHEEVYLGNLKRFQFRELQIATHNFSNKNILGKGGFGNVYKGVLSDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKTKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELFVDKDLKNNYDRIELEEMVQVALLCTQYLPGLRPKMSEVVRMLEGDGLAERWEASQRADMSKCKAPELSSSDRYSDLTDDSSMQVQAMELSGPR	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g01292	642	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	29	602	-	-
	Accr5g01292	642	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	441	453	IPR008271	GO:0004672\|GO:0006468
	Accr5g01292	642	SUPERFAMILY	L domain-like	51	213	-	-
	Accr5g01292	642	Pfam	Protein kinase domain	323	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr5g01292	642	MobiDBLite	consensus disorder prediction	604	642	-	-
	Accr5g01292	642	MobiDBLite	consensus disorder prediction	619	636	-	-
	Accr5g01292	642	Pfam	Leucine rich repeat	139	199	IPR001611	GO:0005515
	Accr5g01292	642	ProSitePatterns	Protein kinases ATP-binding region signature.	328	350	IPR017441	GO:0005524
	Accr5g01292	642	ProSiteProfiles	Protein kinase domain profile.	322	577	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr5g01292	642	Gene3D	Transferase(Phosphotransferase) domain 1	399	611	-	-
	Accr5g01292	642	Pfam	Leucine rich repeat N-terminal domain	51	88	IPR013210	-
	Accr5g01292	642	Gene3D	Ribonuclease Inhibitor	48	230	IPR032675	-
	Accr5g01292	642	SUPERFAMILY	Protein kinase-like (PK-like)	301	592	IPR011009	-
	Accr5g01292	642	FunFam	Somatic embryogenesis receptor kinase 1	291	398	-	-
	Accr5g01292	642	SMART	serkin_6	322	577	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr5g01292	642	FunFam	Somatic embryogenesis receptor-like kinase 1	399	611	-	-
	Accr5g01292	642	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	48	230	-	-
	Accr5g01292	642	Gene3D	Phosphorylase Kinase; domain 1	291	398	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g01292	Accr-Chr5	38776447	38779404	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g01292	1	642	Receptor kinase-like Gene Family	AT5G16000	76.425	0.0	986

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Accr5g01292		Pkinase	1.9e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g01292	-		-	gmx:100798412	1076.23