Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01263 ATGTCCGACGAACCGATGCCCACTCGATGGTCCTTCCAGGACTTCAAATTGATCTATGACGCCAAGTTTGGTAGGAAGAGAATCTTGGAGAATGGCGAGGCAGCTGATAATCCTGTCAGTAATGGAAATGGCAATCTACATCCCAGAAGAACATCGGATACGGCTATCTATGAGCAGTTTCAGAGCCAGGGGCAGAACTCAGACCACTCAAATGCTTTTTCGCCGAACAACATTGGTGATAGGCCACAGAGGTCTTTGCTTCCTCCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATTATTCGTGGGAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAAACGGCCAAACACTTACTGAAAGAGGCTGTTGTAATGCCAATCAAGTATCCCAAATACTTTACTGGTCTATTATCACCCTGGAAAGGCATTCTTCTCTTTGGGCCACCAGGGACAGGAAAGACAATGCTTGCAAAGGCCATTGCAACAGAGTGCAATACTACATTTTTCAATATTTCTGCATCCTCTGTTGTCAGCAAATGGAGAGGCGATTCAGAGAAGTTAGTTAGGGTACTATTTGAGCTTGCTAGGCACCATGCACCCTCAACAATATTTCTTGATGAGATTGATGCAATCATTAGTCAACGTGGTGAATCACGCAGCGAGCATGAAGCAAGTAGGCGGTTAAAAACTGAGTTACTTATACAGATGGATGGCTTGACACAGACTGATGAACTTGTTTTTGTTTTGGCGGCAACAAATATTCCCTGGGAACTGGACGCAGCCATGCTCCGACGTCTTGAGAAGCGAATCCTTGTGCCACTTCCTGAACCAGAAGCAAGAAAAGCAATGTTTGAGGAACTCCTTCCACCACAGCCTGGTGAGGAGCAGATACCCTATGATTTACTGGTGGAGCAGACAGACGGATATTCGGGTTCAGATATCCGGTTACTCTGCAAAGAGGCAGCAATGCAGCCATTGAGACGCTTAATGTCACAACTTGAACAGAGAGAAGAGGTGGTGCCGGAAGAAGAGTTGCCAAAAGTAGGGCCTATCGGACGTAAAGATATAGAGATTGCTTTGAAGAACACAAGGCCGTCCGCTCATCTCCATGCCCACAGATATGAGAAGTTCAATGCTGATTATGGAAGTCAAATACTGCAATTATAA 1194 0.4548 MSDEPMPTRWSFQDFKLIYDAKFGRKRILENGEAADNPVSNGNGNLHPRRTSDTAIYEQFQSQGQNSDHSNAFSPNNIGDRPQRSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLETAKHLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAIATECNTTFFNISASSVVSKWRGDSEKLVRVLFELARHHAPSTIFLDEIDAIISQRGESRSEHEASRRLKTELLIQMDGLTQTDELVFVLAATNIPWELDAAMLRRLEKRILVPLPEPEARKAMFEELLPPQPGEEQIPYDLLVEQTDGYSGSDIRLLCKEAAMQPLRRLMSQLEQREEVVPEEELPKVGPIGRKDIEIALKNTRPSAHLHAHRYEKFNADYGSQILQL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01263 397 Pfam AAA+ lid domain 309 346 IPR041569 -
Accr5g01263 397 FunFam Katanin p60 ATPase-containing subunit A-like 2 111 295 - -
Accr5g01263 397 PANTHER AAA DOMAIN-CONTAINING 64 392 - -
Accr5g01263 397 FunFam Katanin p60 ATPase-containing subunit A-like 2 284 372 - -
Accr5g01263 397 CDD RecA-like_VPS4-like 118 281 - -
Accr5g01263 397 Gene3D - 111 387 IPR027417 -
Accr5g01263 397 Pfam ATPase family associated with various cellular activities (AAA) 152 282 IPR003959 GO:0005524|GO:0016887
Accr5g01263 397 MobiDBLite consensus disorder prediction 61 81 - -
Accr5g01263 397 MobiDBLite consensus disorder prediction 61 86 - -
Accr5g01263 397 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 288 306 - -
Accr5g01263 397 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 156 175 - -
Accr5g01263 397 SMART AAA_5 148 285 IPR003593 GO:0016887
Accr5g01263 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 378 IPR027417 -
Accr5g01263 397 Gene3D - 284 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01263 Accr-Chr5 38427764 38434079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01263 146 355 Calmodulin-binding Proteins AT3G56690 36.574 2.93e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01263 K07767 - gmx:100813164 659.062