Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01246 ATGGTGACTTTTAGGTTCCATCAGTATCAGGTCGTTGGGAGGGCTCTCCCTACGGAATCAGATGATCACCCGAAGATTTTCCGCATGAAGTTATGGGCCACTAACGAGGTGCGCGCCAAGTCGAAGTTCTGGTATTTTTTGAGGAAACTGAAGAAGGTCAAAAAGAGCAACGGTCAAGTGCTTGCGATCAATGAGATCTTTGAGAAGAACCCAACTAAGATAAATAACTATGGCATTTGGCTGCGGTATCAGAGCAGGACTGGCTACCACAACATGTACAAGGAATACCGTGATACCACTCTAAATGGTGCAGTCGAGCAGATGTACACCGAGATGGCTTCCCGCCACAGGGTCCGGTTCCCCTGCATTCAAATCATCAAGACTGCCACGATCCCTGCAAAGCTTTGCAAAAGGGAGAGCAGCAAACAGTTCCACAACTCCAAAATAAAGTTCCCATTGGTTTACAAGAAGATCAGGCCACCCACAAGAAAGCTAAAGACCACGTTCAAGGCATCAAGGCCCAATTTGTTTATGTAA 537 0.4674 MVTFRFHQYQVVGRALPTESDDHPKIFRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVYKKIRPPTRKLKTTFKASRPNLFM 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01246 178 SUPERFAMILY RplX-like 71 146 - -
Accr5g01246 178 Gene3D - 1 70 - -
Accr5g01246 178 Gene3D - 71 143 - -
Accr5g01246 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Accr5g01246 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Accr5g01246 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 3 177 IPR028877 -
Accr5g01246 178 FunFam 60S ribosomal protein L18a 72 147 - -
Accr5g01246 178 FunFam 60S ribosomal protein L18a 1 71 - -
Accr5g01246 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01246 Accr-Chr5 38261431 38263480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01246 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 88.764 6.17e-122 341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g01246 5 38261431 38263480 Accr5g01246 5 38261431 38263480 ECH