Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01235 ATGGGTCGCCGGAAGATCAAGATGGAGATTGTGAAGGACGCAGCGTCCAGGCTGGTCACCTTCTCTAAGCGCCGGAATGGACTATTCAAGAAGGCGAACGAGCTCGCAATCCTGTGCGGCGTGGAACTCGCCATTGTGGTGTTCTCGCCAGGTGGCAAACCTTTCTCCTTCGGCCATCCCTCCGTCAATGCTGTCACTCAGAGGTTTCTCCGGCACCTCCAGCTGGACGAGGAAGAGGAGGCAAAATCGCCGCCAGGTGGGACCTCTGGTTCGAAGAAAGCTCGTCGGAAGGTGGAGAAATTGAACAAGCGGTTAATGAATCTGACGAAGGAGCTGGAGGAAGAGAAGAAAAAGGGGACGATTCTGGACAAGGCGATCGAGGAGAAGAAGCAGGAGTATGGGCTTGAGCCTGGGCCTGGTGATCTGATGAAGCTTGAGGGATTGAAGCGATCGCTGGAGAAAGTGAGGGAAGAGGTGAAGCTGAGGAAGAGAGAAATGGAGGCAGCGTCATCTTTGCTGGTACTTGCAGAGAAATTACAGTTGAAGGAAGACGATAACAATGATGTTGCTGAAAGTGACGATGTGGTGGCGAGTGCTTCAGATGGCGGCGAGATCAGAAATGGAAACTGA 630 0.5302 MGRRKIKMEIVKDAASRLVTFSKRRNGLFKKANELAILCGVELAIVVFSPGGKPFSFGHPSVNAVTQRFLRHLQLDEEEEAKSPPGGTSGSKKARRKVEKLNKRLMNLTKELEEEKKKGTILDKAIEEKKQEYGLEPGPGDLMKLEGLKRSLEKVREEVKLRKREMEAASSLLVLAEKLQLKEDDNNDVAESDDVVASASDGGEIRNGN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01235 209 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Accr5g01235 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr5g01235 209 PANTHER MADS BOX PROTEIN 3 161 - -
Accr5g01235 209 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Accr5g01235 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr5g01235 209 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Accr5g01235 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Accr5g01235 209 MobiDBLite consensus disorder prediction 75 98 - -
Accr5g01235 209 Coils Coil 91 118 - -
Accr5g01235 209 MobiDBLite consensus disorder prediction 180 209 - -
Accr5g01235 209 Coils Coil 142 172 - -
Accr5g01235 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr5g01235 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr5g01235 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01235 Accr-Chr5 38189852 38190481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01235 1 178 Type I MADS-box Gene Family AT2G34440 43.575 5.62e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr5g01235 SRF-TF 4.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01235 - - pcin:129305499 274.633