LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g01234	ATGAGGGCAATGATGTTTTGGAGAAATCTGGAGCAAATTGGACTCACCGCCATAGATTTACGGAATATGGCATTCTCACTAGTTAAATTCTCCTGTTGTCTTCATGTTACTGCCACCTATCTCGTGGACCCTTCCGTTTGCCGTGGTCCTAGCATGATTCCAACAATAGGTCCGATGACTTCATTTTTATTGACCGAAAGGATCTCCCCCCGTTTTGGTAAAGTTGAGCGTGGCGATCTTGTCATTGTGCAGTCACCTGAAAACCCCAGAAAGTTCTCGTGCAAGCGCTTGCTTGGATTGGAAGGTGATAGTGTCACATTTCTCGTTGATCCTAAGAACAGTGATAAATGCGAGACTGTAGTGGTTCCCAAGGGACATGTTTGGGTACAGGGAGATAACATATATAATTCTAGGGATTCAAGGCAATTAGGTCCTGTTCCTTATGGTCTTCTTCAAGCCAAGGTCTTCTGGAGGTTATGGCCACCTGGAGGTTTTGGACCCCTGGGCAAAATCTGA	516	0.4554	MRAMMFWRNLEQIGLTAIDLRNMAFSLVKFSCCLHVTATYLVDPSVCRGPSMIPTIGPMTSFLLTERISPRFGKVERGDLVIVQSPENPRKFSCKRLLGLEGDSVTFLVDPKNSDKCETVVVPKGHVWVQGDNIYNSRDSRQLGPVPYGLLQAKVFWRLWPPGGFGPLGKI	171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g01234	171	FunFam	Inner membrane protease subunit 1	38	167	-	-
	Accr5g01234	171	Gene3D	Umud Fragment, subunit A	37	165	-	-
	Accr5g01234	171	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	20	169	-	-
	Accr5g01234	171	Pfam	Signal peptidase, peptidase S26	116	160	IPR019533	GO:0004252\|GO:0006465
	Accr5g01234	171	Pfam	Signal peptidase, peptidase S26	22	107	IPR019533	GO:0004252\|GO:0006465
	Accr5g01234	171	CDD	S26_SPase_I	44	155	IPR019533	GO:0004252\|GO:0006465
	Accr5g01234	171	SUPERFAMILY	LexA/Signal peptidase	39	168	IPR036286	-
	Accr5g01234	171	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	93	105	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Accr5g01234	171	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	40	56	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Accr5g01234	171	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	122	141	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g01234	Accr-Chr5	38182397	38183206	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g01234	52	169	MADS-box Gene Family	AT1G29960	56.780	4.74e-48	150

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g01234	K09647		-	nnu:104585962	206.068