Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01233 ATGTCTCCAAAGATCAGTTTGACTATACTCATAGTCTTCTTGTTCATTTCAATTTCAACTACGATACTTTCAAATGCAGAACCAAGCTCACGGGAAGAAGTTGAGATTGGAGCTTTGAAAGCTTTCAAAAGCTCAATCACTCATGACCCATACGGAGCATTGGCAGATTGGGTTGACACAACGCGTCATTGCAACTGGTCTGGCATTGCTTGTGATCCATCTTCACATGTTATCTCAATCACTCAGATTGGCAAGAAGCTTCAAGGTAAGATTTCACCATTCCTGGGCAATCTTTCTGGCCTCCAGCTTCTTGACTTGACCTCAAATTCATTTTCTGGGCTCATTCCTCCTCAGCTCAGCTTTTGTTCCCAGCTTTCTCAATTGTATCTTGTTGACAACTCTCTCTCTGGTCCAATCCCGCCTGAGCTAGGAAACTTGAAAGGTCTTCAGTATTTGGATTTGGGCAGTAACATTCTGACCGGAAGCCTCCCAGGAAGCGTGTTTAACTGCACCTCTTTGTTGGGTATTGCTTTTAATTCAAACAATCTGACTGGTAAAATCCCTTCAAATATTGGCAACTTGGTTAATGTTACACAAATTGCGGGATTTGCTAATCAGTTTGTTGGGTCTATTCCCCCTTCCATAGGGAAGTTAGGGGCTTTACAATCTCTAGATTTTAGTCAAAACCAGTTGTCAGGAGAGATACCTAGAGAGATTGGGAATCTAGGAAACTTAGAATATCTTCTCCTATTCGAAAATTCCATGGTTGGAAAAATCCCTTCTGAACTTGGTCAGTGCATGAACCTAGTGAACCTTGAACTGTACACAAATAAGTTGTCTGGAAGCATTCCTCTTGAGCTAGGAAACTTAGTTCATTTGGAAACATTACGGATATATGATAATAACTTCACCTCCACAATTCCTTCTTCCATTTTCCAGCTGAAATCACTAACCAACTTGGGTCTGTCAGAGAATCGGTTAGAAGGAACAATATCTCCTGAAATTGGATCTTTGAGATCACTTAAAGTTCTAACCCTGCATTCAAATAAGTTTACTGGACAAATTCCTTCTTCAATCGCAAACTTGTCAAACCTAACATATCTCTCAGCGAGCCAGAATCTTCTTTCAGGAACACTTCCTTCCAACATAGGATTGCTTCATAATTTGAAGATTCTAGTCCTAAATGGAAACCTTTTGCATGGTCATATCCCACCTAGTATCACCAATTGTACCAGTTTGGTGAATGTAAGTTTGTCCTTTAATTCACTAAGCGGGAACATTCCTGAAGGCTTTTCAAGGATGTCTAATCTTACTTTCTTATCTTTGGCATCAAACAACATGTCTGGTGAAATCCCAGATGATCTCTTCAACTGCTCAAATCTTCGAACTCTAAGTTTGGGTAAGAACAATTTCAGTGGGATGCTAAAACCTTCAATCAAAAACCTGTTCAATCTCAGGACCCTTCAGCTGAATTTAAATTCTTTCACAGGGCCTATTCCACTTGAGATAGGGAATTTAAATCAACTTGTGACATTATCACTTTCTGATAATAGATTTTCTGGTCACATTCCTTTAGAGCTATCCAATCTCACTTTTCTTCAGGGTCTCTACTTGCAAGACAATGCATTAGAAGGAACGGTACCTAATCAGTTATTTGAATTGAATCAACTAACCGTACTTCAGTTACATCAGAACAAGCTGGTTGGTCAAATCCCAAAGGCTTTCTCCAAACTTAAGATGCTTTCTCACTTAGACCTCCATGGGAACATGTTCAATGGATCAATTCCAAGCGAGTTGAGTCAACTCAACCAGCTCTTAATGTTGGACCTGTCACAGAACCACCTGACAGGGTCAATTCCTGGGGATGTCATTGCATCTTTTAGAGACATGCAGCTATATCTCAACTTGTCTCATAACCACTTTATCGGAGCAATTCCGGAAGAGCTGGGTATGATCGAAATGATACAAGCAATTGATGTTTCAAACAACAATCTATCTGGTGTCATTCCCAAGGCACTCTCAGGGTGTAAGAATCTATATAATCTTGATCTTTCAGGAAACAATATCTCAGGCCCTATTCCAGCACAGGCTTTCAATAACATGGATTTGCTTCAAAGCTTGAACCTTTCAAGGAACCATTTAGATGGAGAAATCTCAGAGACATTGGCAAAGCTTGAGCATCTTACTTCCTTGGATCTTTCTCACAATAACTTGGAGGGATCTATCTCTGATAATTTTGCCAATCTCTCCAACCTAAAGCTTCTCAACCTTTCTTTCAACCGACTTGAAGGTCAAGTTCCATCAAGCGGAATATTCTCACATATAGATGCATCTGATTTGATGGGAAACCCTGCTCTTTGTGGAACCAAATTTCTGATGCCATGTAGGGAAACAACAAGGAGATCTCATTCACTATCCAAGAAGAGCATATATATTATTGCCTCACTTGGATCTGTTGCTGTCCTCTTAATTTTGGTATTGGTGATTCTATTTCTCATACAACGCTCAAGATCACGCCGTTCTAACAAGCTTGAGACTCATGAACTACCAAACTACACGCCAGCCTTGACACTTGAAAGATTTGAGAGAAAGGACCTAGAAAATGCTACTAGTTGTTTCAGCTCAGATAACATCATTGGAGCTAGCAGTTTGAGCACTGTTTATAAGGGTCAATTGGGAGATGGCAAGATAGTGGCAATAAAAAAACTGAACTTGGACCATTTTTCTGCAGAATGTGACAAATATTTCAAGAGAGAAACAAGCATCTTGAGCCAACTAAGGCATAGGAATTTGGTCAAGGTTCTGGGGTATGCTTGGGAGAGTGGGAAAATAAAGGCTCTAGTTTTGGAGTACATGCAGAATGGGAATTTGGATAGCATGATACATGAAGAAGGGATGATGGACCAAAGTAGATGGACATTATCTGAAAGGCTTAATGTTTTGATTTCTGTTGCTGATGCATTGGATTACTTGCACTCTGGTTATGATATTCCAATTGTGCATTGTGATTTAAAGCCTTCTAATATTCTTTTGGATGGAGACTGGGTGGCCCATGTGAGTGATTTTGGAACAGCTAGAATGCTTGGTCTCCATTTGCAAGATGGTGCTTCTTTGTCCTCATCAGCAGCTTTCCAAGGCACTGTTGGTTATTTGGCTCCAGAGCTTGCGTACATGAGGAAATTAACGACCAAAGTTGACGTGTTCAGCTTTGGTATAGTAGCAATGGAGTTTCTAACGAGAAGGAGACCAACAGGGATCGCAGAAGAAGATGGCTTGCCCATAAGTCTGCGTGAAATAGTGCAGAAAGCACTTGCCGGTACTGGAACAAAGCAACACGTTCTTCAAGTTGTGGATCCTTTGCTCTTTGACAAGGAGCTCCATGAAGATGTCTTAATGGAGCTTTTGAAGCTATCACTGAATTGTACTCTCCCTGATCCTGAAGATCGTCCTAATATGAAACAAGTGTTGCCTGTCTTGATGATGCTTAAGAAGCAAATATCATAG 3504 0.4047 MSPKISLTILIVFLFISISTTILSNAEPSSREEVEIGALKAFKSSITHDPYGALADWVDTTRHCNWSGIACDPSSHVISITQIGKKLQGKISPFLGNLSGLQLLDLTSNSFSGLIPPQLSFCSQLSQLYLVDNSLSGPIPPELGNLKGLQYLDLGSNILTGSLPGSVFNCTSLLGIAFNSNNLTGKIPSNIGNLVNVTQIAGFANQFVGSIPPSIGKLGALQSLDFSQNQLSGEIPREIGNLGNLEYLLLFENSMVGKIPSELGQCMNLVNLELYTNKLSGSIPLELGNLVHLETLRIYDNNFTSTIPSSIFQLKSLTNLGLSENRLEGTISPEIGSLRSLKVLTLHSNKFTGQIPSSIANLSNLTYLSASQNLLSGTLPSNIGLLHNLKILVLNGNLLHGHIPPSITNCTSLVNVSLSFNSLSGNIPEGFSRMSNLTFLSLASNNMSGEIPDDLFNCSNLRTLSLGKNNFSGMLKPSIKNLFNLRTLQLNLNSFTGPIPLEIGNLNQLVTLSLSDNRFSGHIPLELSNLTFLQGLYLQDNALEGTVPNQLFELNQLTVLQLHQNKLVGQIPKAFSKLKMLSHLDLHGNMFNGSIPSELSQLNQLLMLDLSQNHLTGSIPGDVIASFRDMQLYLNLSHNHFIGAIPEELGMIEMIQAIDVSNNNLSGVIPKALSGCKNLYNLDLSGNNISGPIPAQAFNNMDLLQSLNLSRNHLDGEISETLAKLEHLTSLDLSHNNLEGSISDNFANLSNLKLLNLSFNRLEGQVPSSGIFSHIDASDLMGNPALCGTKFLMPCRETTRRSHSLSKKSIYIIASLGSVAVLLILVLVILFLIQRSRSRRSNKLETHELPNYTPALTLERFERKDLENATSCFSSDNIIGASSLSTVYKGQLGDGKIVAIKKLNLDHFSAECDKYFKRETSILSQLRHRNLVKVLGYAWESGKIKALVLEYMQNGNLDSMIHEEGMMDQSRWTLSERLNVLISVADALDYLHSGYDIPIVHCDLKPSNILLDGDWVAHVSDFGTARMLGLHLQDGASLSSSAAFQGTVGYLAPELAYMRKLTTKVDVFSFGIVAMEFLTRRRPTGIAEEDGLPISLREIVQKALAGTGTKQHVLQVVDPLLFDKELHEDVLMELLKLSLNCTLPDPEDRPNMKQVLPVLMMLKKQIS 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01233 1167 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 621 799 - -
Accr5g01233 1167 SUPERFAMILY RNI-like 307 640 - -
Accr5g01233 1167 Gene3D Ribonuclease Inhibitor 32 199 IPR032675 -
Accr5g01233 1167 Gene3D Ribonuclease Inhibitor 286 383 IPR032675 -
Accr5g01233 1167 PRINTS Leucine-rich repeat signature 728 741 - -
Accr5g01233 1167 PRINTS Leucine-rich repeat signature 749 762 - -
Accr5g01233 1167 Pfam Leucine rich repeat 533 590 IPR001611 GO:0005515
Accr5g01233 1167 Pfam Leucine rich repeat 656 714 IPR001611 GO:0005515
Accr5g01233 1167 Gene3D Transferase(Phosphotransferase) domain 1 952 1167 - -
Accr5g01233 1167 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 833 951 - -
Accr5g01233 1167 SUPERFAMILY L domain-like 569 789 - -
Accr5g01233 1167 Gene3D Ribonuclease Inhibitor 205 285 IPR032675 -
Accr5g01233 1167 ProSiteProfiles Leucine-rich repeat profile. 727 750 IPR001611 GO:0005515
Accr5g01233 1167 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 381 475 - -
Accr5g01233 1167 Gene3D Phosphorylase Kinase; domain 1 833 951 - -
Accr5g01233 1167 SMART LRR_typ_2 506 530 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 434 458 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 290 314 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 218 242 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 578 602 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 701 724 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 676 700 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 98 122 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 386 410 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 338 362 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 146 170 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 749 774 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 725 748 IPR003591 -
Accr5g01233 1167 SMART LRR_typ_2 554 577 IPR003591 -
Accr5g01233 1167 FunFam Piriformospora indica-insensitive protein 2 285 380 - -
Accr5g01233 1167 Gene3D Ribonuclease Inhibitor 629 804 IPR032675 -
Accr5g01233 1167 Gene3D Ribonuclease Inhibitor 385 628 IPR032675 -
Accr5g01233 1167 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 32 185 - -
Accr5g01233 1167 SMART serkin_6 873 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g01233 1167 SMART LRR_sd22_2 146 178 - -
Accr5g01233 1167 SMART LRR_sd22_2 676 703 - -
Accr5g01233 1167 SMART LRR_sd22_2 218 244 - -
Accr5g01233 1167 SMART LRR_sd22_2 725 748 - -
Accr5g01233 1167 SMART LRR_sd22_2 749 777 - -
Accr5g01233 1167 SMART LRR_sd22_2 362 385 - -
Accr5g01233 1167 SMART LRR_sd22_2 386 418 - -
Accr5g01233 1167 SMART LRR_sd22_2 506 527 - -
Accr5g01233 1167 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Accr5g01233 1167 ProSiteProfiles Protein kinase domain profile. 873 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g01233 1167 Pfam Leucine Rich Repeat 727 749 IPR001611 GO:0005515
Accr5g01233 1167 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 476 571 - -
Accr5g01233 1167 SUPERFAMILY Protein kinase-like (PK-like) 853 1161 IPR011009 -
Accr5g01233 1167 SUPERFAMILY RNI-like 87 398 - -
Accr5g01233 1167 ProSitePatterns Serine/Threonine protein kinases active-site signature. 999 1011 IPR008271 GO:0004672|GO:0006468
Accr5g01233 1167 CDD STKc_IRAK 879 1160 - -
Accr5g01233 1167 Pfam Protein kinase domain 875 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr5g01233 1167 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 952 1167 - -
Accr5g01233 1167 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 433 1159 - -
Accr5g01233 1167 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 186 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01233 Accr-Chr5 38168511 38172669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01233 12 1165 Receptor kinase-like Gene Family AT5G46330 53.012 0.0 1145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Accr5g01233 Pkinase 5.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01233 K13420 - gmx:100817960 1530