LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g01211	ATGAAGCAGTCTTTTGACATTTCGGTTTCTGTAGGTCCAACCCAGATTTCATCTATAAATATTCCTAAAGAAGTGGGACGCAATGCATGGGAGGTTTTATCTGGATCTGATGCCTACCATGCCTCGTCGGATGCTAGCCTTTTTTCTAGCTCATTACCTGTTTTGTCACATGAAAAGTTAAACTTCAATGACACTGAAAATGAGTATCCGTCTGTGGATGACATCTCATCTGTCTTTAAAAAGCATCACCAAGATTTAGAGGTTAATGAATCACATGAAGATGCAAATATTCATGCACTTGGAACAACGCTTCCAGATGACGAGGAGGAGCTTTTAGCTGGCATAACAGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCTTGGAGGATTTGGAAGATTATGATCTTTTTGGTAGTGGTGGAGGAATGGAACTGGAAATTGATCCCCAGGAGAGTCTCACAGCGGGCATTTCAAAATTAGTTTTCTCTGATAGCACAACTGGAAATGGTTTGCCCCATTATTCTTTTCCTAATGGTATCGGAACAGTTGCTGGGGAACATCCCTATGGGGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAATTGAAAGCCCTTTTTGAGCAATACGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTTTATTGCAAAGCAAACCACTGCGGCGGAGGAAACTTGACATTCATTTCTCAATACCAAAGGATAATCCATCTGACAAGGATATGAATCAAGGAACTTTGGTGGTTTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACCCCTCACAAGAGGCATCATAAATTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCTGCACTCAAATCATTGAACAGGAGTGACATTGCGGGTAAACGTATAAAGCTGGAACCTAGCCGTCCTGGTGGAGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGATCCTGATCAAGATGAAGCTTGGATTTTGCGACATAAGGTGGGTTCACCTGTGGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAGCAGCCCCATTGAGCATAAGTCAATGCAATCAATCAGCAATTCTCCTGGTTCAAGGATTATGAGCCCAACAACTGGCAACCATTTACCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTCTAAAGGCTGCAGCTATTGGTAAGGACCTAGGAAGGAATAGTCATGGAGATCATATGTTTAGTAGTTGCAATTTATCACATGAAGCCGCATTTCAATCTCACTCACTCCCAGAACCAACATTCGGCCAATATCACGGAGCTTTGTCCTCTTTTGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGACCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACCAAACCTTCACCTTGGTCTAGACCATCCGTAGGGCCTCCATTCACATCGAATGGAAAGGTTCATGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGATCGTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGTCCTTTGGTTTTTTTCCTGAATCTCCCGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCATAAATGTAGGACAAAATGATGGAAAGTACATGGTTAACATGGGTGGATCTGTTAATGCTAGCATTACAATACCGAGGAACGTGTCTGAAAATGTTCAATCAAACTTTAGAATGAGAACTTCTCCCAGGCTTAGCCCTGTGTTTCTAAGCAATGGTCCTTACCCTGGCCTGCCACCCACTGTCTTGGATGGTTTGACTGAGCGTGGAAGGAGTAGACGGCTTGAGAACAATGGTAACCAAGTTGATAGCAAGAAGCAATTTTTGCTTGACTTGGATAAAATTAAAAGTGGTGAAGATGCCAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCTGCCATCGACGAAAATCATAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTCAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCTTCTCTTATCATTCCATTCTACGAGACATTCAATGGAAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTAGGACACTTCCAGAATTCAAGCTTGATGAATGAAGACAGGCGATGTCGCCCTATTCTTTTTCACTCAGAGGGTCCTGAAGCTGGTGATCAGATCGTACAAGAACATCTTCCCTCCAACTATCTCAACATCCAGGTCCTCAAGTCAAGTGATTCTCATTTGAATGACTCTCTTGGAAGTCCCCCAAAGGATAACCCTCATGTGAACTTTGAGACTAGTTAA	2583	0.422	MKQSFDISVSVGPTQISSINIPKEVGRNAWEVLSGSDAYHASSDASLFSSSLPVLSHEKLNFNDTENEYPSVDDISSVFKKHHQDLEVNESHEDANIHALGTTLPDDEEELLAGITDDFDLSGLPGSLEDLEDYDLFGSGGGMELEIDPQESLTAGISKLVFSDSTTGNGLPHYSFPNGIGTVAGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRLLQSKPLRRRKLDIHFSIPKDNPSDKDMNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDPDQDEAWILRHKVGSPVANSPPGNWLQFSSPIEHKSMQSISNSPGSRIMSPTTGNHLPGLASILQPQGSNSLKAAAIGKDLGRNSHGDHMFSSCNLSHEAAFQSHSLPEPTFGQYHGALSSFGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWSRPSVGPPFTSNGKVHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERSFGFFPESPETSFMNHVGYGGINVGQNDGKYMVNMGGSVNASITIPRNVSENVQSNFRMRTSPRLSPVFLSNGPYPGLPPTVLDGLTERGRSRRLENNGNQVDSKKQFLLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVGHFQNSSLMNEDRRCRPILFHSEGPEAGDQIVQEHLPSNYLNIQVLKSSDSHLNDSLGSPPKDNPHVNFETS	860

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g01211	860	Gene3D	-	184	278	IPR012677	-
	Accr5g01211	860	CDD	RRM1_MEI2_like	194	270	IPR034453	-
	Accr5g01211	860	SUPERFAMILY	RNA-binding domain, RBD	192	355	IPR035979	GO:0003676
	Accr5g01211	860	Gene3D	-	279	371	IPR012677	-
	Accr5g01211	860	MobiDBLite	consensus disorder prediction	840	860	-	-
	Accr5g01211	860	FunFam	MEI2-like protein 5 isoform 2	184	278	-	-
	Accr5g01211	860	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	280	353	IPR000504	GO:0003723
	Accr5g01211	860	CDD	RRM2_MEI2_like	279	349	-	-
	Accr5g01211	860	SUPERFAMILY	RNA-binding domain, RBD	698	783	IPR035979	GO:0003676
	Accr5g01211	860	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	195	268	IPR000504	GO:0003723
	Accr5g01211	860	FunFam	Protein MEI2-like 1	279	374	-	-
	Accr5g01211	860	CDD	RRM3_MEI2_like	699	784	IPR034454	-
	Accr5g01211	860	Pfam	RNA recognition motif 2	696	792	IPR007201	-
	Accr5g01211	860	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	45	814	-	-
	Accr5g01211	860	SMART	rrm1_1	698	774	IPR000504	GO:0003723
	Accr5g01211	860	SMART	rrm1_1	196	264	IPR000504	GO:0003723
	Accr5g01211	860	SMART	rrm1_1	281	349	IPR000504	GO:0003723
	Accr5g01211	860	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	197	261	IPR000504	GO:0003723
	Accr5g01211	860	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	282	347	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g01211	Accr-Chr5	37928454	37933685	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g01211	190	388	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.333	1.73e-06	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g01211	-		-	gmx:100800877	1405.58