LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g01210	ATGAAGCAGTCTTTTGACATTTCGGTTTCTGGTCCAACCCAGATTTCATCTATAAATATTCCTAAAGAAGTGGGACGCAATGCATGGGAGGTTTTATCTGGATCTGATGCCTACCATGCCTCGTCGGATGCTAGCCTTTTTTCTAGCTCATTACCTGTTTTGTCACATGAAAAGTTAAACTTCAATGACACTGAAAATGAGTATCCGTCTGTGGATGACATCTCATCTGTCTTTAAAAAGCATCACCAAGATTTAGAGGTTAATGAATCACATGAAGATGCAAATATTCATGCACTTGGAACAACGCTTCCAGATGACGAGGAGGAGCTTTTAGCTGGCATAACAGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCTTGGAGGATTTGGAAGATTATGATCTTTTTGGTAGTGGTGGAGGAATGGAACTGGAAATTGATCCCCAGGAGAGTCTCACAGCGGGCATTTCAAAATTAGTTTTCTCTGATAGCACAACTGGAAATGGTTTGCCCCATTATTCTTTTCCTAATGGTATCGGAACAGTTGCTGGGGAACATCCCTATGGGGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAATTGAAAGCCCTTTTTGAGCAATACGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTTTATTGCAAAGCAAACCACTGCGGCGGAGGAAACTTGACATTCATTTCTCAATACCAAAGGATAATCCATCTGACAAGGATATGAATCAAGGAACTTTGGTGGTTTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACCCCTCACAAGAGGCATCATAAATTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCTGCACTCAAATCATTGAACAGGAGTGACATTGCGGGTAAACGTATAAAGCTGGAACCTAGCCGTCCTGGTGGAGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGATCCTGATCAAGATGAAGCTTGGATTTTGCGACATAAGGTGGGTTCACCTGTGGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAGCAGCCCCATTGAGCATAAGTCAATGCAATCAATCAGCAATTCTCCTGGTTCAAGGATTATGAGCCCAACAACTGGCAACCATTTACCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTCTAAAGGCTGCAGCTATTGGTAAGGACCTAGGAAGGAATAGTCATGGAGATCATATGTTTAGTAGTTGCAATTTATCACATGAAGCCGCATTTCAATCTCACTCACTCCCAGAACCAACATTCGGCCAATATCACGGAGCTTTGTCCTCTTTTGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGACCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACCAAACCTTCACCTTGGTCTAGACCATCCGTAGGGCCTCCATTCACATCGAATGGAAAGGTTCATGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGATCGTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGTCCTTTGGTTTTTTTCCTGAATCTCCCGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCATAAATGTAGGACAAAATGATGGAAAGTACATGGTTAACATGGGTGGATCTGTTAATGCTAGCATTACAATACCGAGGAACGTGTCTGAAAATGTTCAATCAAACTTTAGAATGAGAACTTCTCCCAGGCTTAGCCCTGTGTTTCTAAGCAATGGTCCTTACCCTGGCCTGCCACCCACTGTCTTGGATGGTTTGACTGAGCGTGGAAGGAGTAGACGGCTTGAGAACAATGGTAACCAAGTTGATAGCAAGAAGCAATTTTTGCTTGACTTGGATAAAATTAAAAGTGGTGAAGATGCCAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCTGCCATCGACGAAAATCATAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTCAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCTTCTCTTATCATTCCATTCTACGAGACATTCAATGGAAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTAGGACACTTCCAGAATTCAAGCTTGATGAATGAAGACAGGCGATGTCGCCCTATTCTTTTTCACTCAGAGGGTCCTGAAGCTGGTGATCAGATCGTACAAGAACATCTTCCCTCCAACTATCTCAACATCCAGGTCCTCAAGTCAAGTGATTCTCATTTGAATGACTCTCTTGGAAGTCCCCCAAAGGATAACCCTCATGTGAACTTTGAGACTAGTTAA	2580	0.4221	MKQSFDISVSGPTQISSINIPKEVGRNAWEVLSGSDAYHASSDASLFSSSLPVLSHEKLNFNDTENEYPSVDDISSVFKKHHQDLEVNESHEDANIHALGTTLPDDEEELLAGITDDFDLSGLPGSLEDLEDYDLFGSGGGMELEIDPQESLTAGISKLVFSDSTTGNGLPHYSFPNGIGTVAGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRLLQSKPLRRRKLDIHFSIPKDNPSDKDMNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDPDQDEAWILRHKVGSPVANSPPGNWLQFSSPIEHKSMQSISNSPGSRIMSPTTGNHLPGLASILQPQGSNSLKAAAIGKDLGRNSHGDHMFSSCNLSHEAAFQSHSLPEPTFGQYHGALSSFGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWSRPSVGPPFTSNGKVHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERSFGFFPESPETSFMNHVGYGGINVGQNDGKYMVNMGGSVNASITIPRNVSENVQSNFRMRTSPRLSPVFLSNGPYPGLPPTVLDGLTERGRSRRLENNGNQVDSKKQFLLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVGHFQNSSLMNEDRRCRPILFHSEGPEAGDQIVQEHLPSNYLNIQVLKSSDSHLNDSLGSPPKDNPHVNFETS	859

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g01210	859	CDD	RRM3_MEI2_like	698	783	IPR034454	-
	Accr5g01210	859	MobiDBLite	consensus disorder prediction	839	859	-	-
	Accr5g01210	859	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	281	346	IPR000504	GO:0003723
	Accr5g01210	859	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	196	260	IPR000504	GO:0003723
	Accr5g01210	859	FunFam	MEI2-like protein 5 isoform 2	183	277	-	-
	Accr5g01210	859	SUPERFAMILY	RNA-binding domain, RBD	697	782	IPR035979	GO:0003676
	Accr5g01210	859	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	44	813	-	-
	Accr5g01210	859	FunFam	Protein MEI2-like 1	278	373	-	-
	Accr5g01210	859	CDD	RRM2_MEI2_like	278	348	-	-
	Accr5g01210	859	SUPERFAMILY	RNA-binding domain, RBD	191	354	IPR035979	GO:0003676
	Accr5g01210	859	Gene3D	-	278	370	IPR012677	-
	Accr5g01210	859	SMART	rrm1_1	280	348	IPR000504	GO:0003723
	Accr5g01210	859	SMART	rrm1_1	195	263	IPR000504	GO:0003723
	Accr5g01210	859	SMART	rrm1_1	697	773	IPR000504	GO:0003723
	Accr5g01210	859	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	194	267	IPR000504	GO:0003723
	Accr5g01210	859	CDD	RRM1_MEI2_like	193	269	IPR034453	-
	Accr5g01210	859	Gene3D	-	183	277	IPR012677	-
	Accr5g01210	859	Pfam	RNA recognition motif 2	695	791	IPR007201	-
	Accr5g01210	859	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	279	352	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g01210	Accr-Chr5	37928454	37933685	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g01210	189	387	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.333	1.70e-06	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g01210	-		-	gmx:100800877	1409.05