Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01130 ATGCATCGATCAGTCCCACCTTTGACACCCATCGACAGATTCTTATGGAGCCAGCACGCACAGAATCACATGGCTTCTACTGTTTGGCCTAACAGTGGATCAGGATCAAGTTTCATTGATGGGTTTGTGTTACCAAATGAGCAAGCTTTGAACTGGACACACGCTCAAGTCCCACCATTGTGCTTCAGAAACAGTGTTCCGGGGAAGCATCATGATGGTGGTGGTGGAGATACTGTGGGAAGGAGAATTAAGAAGAAAGGGTCTCGTGTGTCCTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAATTGGTGAGATTGGTGAATCAATATGGTGTGAAGAAATGGGCTCAAATAGCTGAGAAATTGGATGGAAGAGCGGGCAAGCAGTGTAGAGAGAGATGGCATAATCATTTGCGCCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATACTGGTGGAAACACATGCCAAGGTTGGGAATCGTTGGGCAGAAATAGCAAAAAGCATTCCAGGAAGAACAGAGAACGCAATCAAGAACCATTGGAATGCCACTAAAAGAAGACAGAATTCAAAGAGGAAGAAGAAAATCACACACACAAATCACAAAAGGACACGTCCCTCTATACTTGAAGACTACATCAGAAACAAGACCCTGCTAAAAAATAACACAGCCCAGAAGAACAACATTGCAGAAAACCAATCTGAACGCTCTTCTGAATCTGCTCTTGTTAACGCCAACTCTGTAATAGCTGAACCATTTGATGAGGAATTGCTCTTCTTGCAAGGATTTTTCGCTGACAACCTGAATCACAAACAGTATATTTCTGCTGCTGATGCTGAACACTCTGAGAATTCCTCAACTTGCTTCCCGTTGGACTTTTGTCAAACAGATGGTGAACATCATTTTATCACTGACGTGACTACCACAGGGTCTGGATTTGTGTATTCCATTTCAAACCCAGATAACAAAACAAGCTTCTATGAGAATCTCCTCACTGAGGAGGCCGTCACTCCCATTAAACACTCCCAATCTGATCTTTATCTCTCTCACTTGCTCAACGGACCACCCTCCAATTCATCACTTCTATATGGGTGTGGAAATCATCCAAACCTGAACATGAATTTGCTTATGGGTTATCAGGACAATAGTTCAGAACGAAAGCCAGAGATGGATTTGATGGAATTGGTTTCTTCAAAGTTTTCTCCAAGCACCAACAGTAGTGTTTGA 1245 0.4289 MHRSVPPLTPIDRFLWSQHAQNHMASTVWPNSGSGSSFIDGFVLPNEQALNWTHAQVPPLCFRNSVPGKHHDGGGGDTVGRRIKKKGSRVSLIKGQWTDEEDRKLVRLVNQYGVKKWAQIAEKLDGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVETHAKVGNRWAEIAKSIPGRTENAIKNHWNATKRRQNSKRKKKITHTNHKRTRPSILEDYIRNKTLLKNNTAQKNNIAENQSERSSESALVNANSVIAEPFDEELLFLQGFFADNLNHKQYISAADAEHSENSSTCFPLDFCQTDGEHHFITDVTTTGSGFVYSISNPDNKTSFYENLLTEEAVTPIKHSQSDLYLSHLLNGPPSNSSLLYGCGNHPNLNMNLLMGYQDNSSERKPEMDLMELVSSKFSPSTNSSV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01130 414 ProSiteProfiles Myb-like domain profile. 89 140 IPR001005 -
Accr5g01130 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 195 IPR017930 -
Accr5g01130 414 Gene3D - 147 216 - -
Accr5g01130 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 144 IPR017930 -
Accr5g01130 414 Gene3D - 93 145 - -
Accr5g01130 414 ProSiteProfiles Myb-like domain profile. 141 191 IPR001005 -
Accr5g01130 414 Pfam Myb-like DNA-binding domain 97 154 - -
Accr5g01130 414 FunFam Transcriptional activator Myb isoform A 93 146 - -
Accr5g01130 414 CDD SANT 148 191 IPR001005 -
Accr5g01130 414 PANTHER MYB PROTEIN-RELATED 94 221 - -
Accr5g01130 414 SMART sant 93 142 IPR001005 -
Accr5g01130 414 SMART sant 145 193 IPR001005 -
Accr5g01130 414 SUPERFAMILY Homeodomain-like 91 187 IPR009057 -
Accr5g01130 414 CDD SANT 97 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01130 Accr-Chr5 36925449 36927542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01130 1 409 MYB Transcription Factor Family AT5G58850 39.606 5.05e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr5g01130 Myb_DNA-bind_6 3.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01130 K09422 - gmx:100786295 325.094