Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01109 ATGGTTTACTGCTCTTATAATTCGATTTCTTCATCTGGGTCTGATGTCTCGAGGCTGTTCGATCCAACTTCGAATAAGACTGTTGTTGATTATAATCGGGCTTCGCAGAGTGGGTTGGCGTCACCCAATTCGTTGGTCTTGAATAGTGAGAAGGGGGATCTGGTTAATTCCCCTATGAAAATTGGAAAGAAAGAGGCGTCTGAAGCGAAAGCTTTGGCGGCTATGAAGAACCACAGTGAAGCAGAGAGAAGGAGAAGGGAGAGAATTAATGGTCATCTTGATACACTTCGTGGTCTTGTGCCCTGCAATGCGAAGATGGATAAGGCAGCGTTATTGGCTGAAGTTATCAACCAAGTTAAGTTACTGAAGAAGAATGCAACAGAAGCAAGCAGGGGTTTTCTCATTCCAATGGATGATGATGAAGTTAAAGTTGAACCATACAATCATGAAGGAAGAGAAGGATCAATGTTTTACATGGCATCTATATGTTGCGATTACCGGCCGGAGCTACTATCCGACCTCAGACAGGCTCTAGATGGCCTTCAACTACAACTGATGAGGGCAGAGATATCAACTTTGGGAGGAAGGGTGAAGAATGTATTTTTCTTTAGATGCTGCAAAACAGAACATATTAATATTGAAGCATGCCAACTTGTTCCAAGTACTGTCCACCAGGTACTAAGTTCTGTACTAGAGAAGGCTTCTAGCTCACTGGAATACTCTCTGGGAATGTCACTTCGAAGCAAGCGTAGAAGACTTTGCTTCATTGAAACATCAACTTCATCATGA 789 0.4284 MVYCSYNSISSSGSDVSRLFDPTSNKTVVDYNRASQSGLASPNSLVLNSEKGDLVNSPMKIGKKEASEAKALAAMKNHSEAERRRRERINGHLDTLRGLVPCNAKMDKAALLAEVINQVKLLKKNATEASRGFLIPMDDDEVKVEPYNHEGREGSMFYMASICCDYRPELLSDLRQALDGLQLQLMRAEISTLGGRVKNVFFFRCCKTEHINIEACQLVPSTVHQVLSSVLEKASSSLEYSLGMSLRSKRRRLCFIETSTSS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01109 262 PANTHER TRANSCRIPTION FACTOR BHLH30 34 257 IPR045847 GO:0003700|GO:0006355
Accr5g01109 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 128 IPR036638 GO:0046983
Accr5g01109 262 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Accr5g01109 262 Coils Coil 171 191 - -
Accr5g01109 262 CDD ACT_UUR-ACR-like 161 202 - -
Accr5g01109 262 Gene3D - 68 131 IPR036638 GO:0046983
Accr5g01109 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Accr5g01109 262 SMART finulus 79 128 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01109 Accr-Chr5 36652498 36654956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01109 60 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.051 1.35e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g01109 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01109 - - gmx:100804756 322.783