Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01107 ATGGATTTCTCAAAGAAGCGCAAAACCGAGGAGAACGGGACCGACGATTCTGTGCCCTCAACAACCCCCCTTGGCGCGGATGACATCCGCAAGATCCTCCGACCCTTCACGCAAGAACAGCTTATAGACCTGCTTCAATCCGCTGCTCTTAGTCACCCTGACGTTCTCGAGTCTATACGTTCCGTCGCCGACCGTGACTCCACCCTTCGGAAGCTCTTTGTTCGGGGGCTTGCTGGGGAAACCACCACAGAGACACTCAGCAGTGTTTTCTCCTCCTATGGACCGCTCGACGAGGCAATCGTTATTTTCGACAAAAATACCGGGAAGTCCAAAGGATACGGCTTTGTGACGTTTAAGCACGTTGATGGTGCTATATTGGCTTTGAAAGAGCCCAGCAAGAAAATTGACGGGAGAATGACGGTGACACAGCTTGCAGCTGCTGGATTATCGGCCACTCAAGGGACTAATGCGGCTGCCGCAGCCACAAGTGACGTTTCTACTCGAAAAATTTTTGTAGGTAATGTTCCGTTTGATATATCGTCGGAGAGACTGTTGAATTACTTTTCAGCGTATGGGGAAATCGAAGAAGGGCCTCTTGGGTTCGATAAAGGTAATGGAAAGTCCAAAGGTTTTGCATTCTTTGTGTACAAAACGGAGGAGGGTGCTAGAGCGTCTCTAGTTGAGCCAGTCAAAACTGTTGATGGGCATCAAGTTCTCTGTAAATTGGCCATGGATAACAAGAAGGGAAAATCAGGAGCTACTAATCAGGGCCCTCCTGGGTTGCCAGGTAATGGTATGGCAGCACAACAACCGCAACAATCTTTACCTGGCCCTATGATGGGATCAAATTATGGCGGTCATGGCTCTTCATATGGGGGATTTGGTGGTGCGCATCAGGGCCCCATGACAGTGCCTGGTAATACTTATGGGTTGCAGTCTTCATTGCCGCCATATGGTACTCAGGTTCCCTCTACCTTAGCTCCCAACAGCGTTGGGGGGTATGGTCCTGGAATTGGAGGGGCTTATGGTGGCTCTCAGTTCAGTGGGCCTACTTCCGGTGATTATGGAGCTAGGATGCCTCCAACTTCTGCTGGAATGCCTTCCGGAGGATATCCAGACGGTTCGCATTATAATTTGCCCTCATCTGCTGTTCCCTCGCAGCATCAACAGCCCATGCAAATGCCAAGGATGGCTCCCGGTGGAATGTACCAAGGCATGCCGCCCTACTACTGA 1233 0.5069 MDFSKKRKTEENGTDDSVPSTTPLGADDIRKILRPFTQEQLIDLLQSAALSHPDVLESIRSVADRDSTLRKLFVRGLAGETTTETLSSVFSSYGPLDEAIVIFDKNTGKSKGYGFVTFKHVDGAILALKEPSKKIDGRMTVTQLAAAGLSATQGTNAAAAATSDVSTRKIFVGNVPFDISSERLLNYFSAYGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGARASLVEPVKTVDGHQVLCKLAMDNKKGKSGATNQGPPGLPGNGMAAQQPQQSLPGPMMGSNYGGHGSSYGGFGGAHQGPMTVPGNTYGLQSSLPPYGTQVPSTLAPNSVGGYGPGIGGAYGGSQFSGPTSGDYGARMPPTSAGMPSGGYPDGSHYNLPSSAVPSQHQQPMQMPRMAPGGMYQGMPPYY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01107 410 SMART rrm1_1 71 143 IPR000504 GO:0003723
Accr5g01107 410 SMART rrm1_1 169 241 IPR000504 GO:0003723
Accr5g01107 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 235 IPR000504 GO:0003723
Accr5g01107 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Accr5g01107 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Accr5g01107 410 MobiDBLite consensus disorder prediction 246 276 - -
Accr5g01107 410 PANTHER GEO13361P1-RELATED 51 298 - -
Accr5g01107 410 MobiDBLite consensus disorder prediction 352 375 - -
Accr5g01107 410 Gene3D - 61 149 IPR012677 -
Accr5g01107 410 SUPERFAMILY RNA-binding domain, RBD 154 253 IPR035979 GO:0003676
Accr5g01107 410 Gene3D - 150 298 IPR012677 -
Accr5g01107 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 256 IPR000504 GO:0003723
Accr5g01107 410 MobiDBLite consensus disorder prediction 1 24 - -
Accr5g01107 410 SUPERFAMILY RNA-binding domain, RBD 60 145 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01107 Accr-Chr5 36640281 36641513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01107 160 375 C2H2 Transcription Factor Family AT2G19380 28.947 8.97e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01107 K12741 - zju:107411269 473.781