Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01082 ATGGGTTTTGCAGATGGAGAAGATCACTCACTTGGTTTTGGCCTGAGGGTGATGATCGTCGCAGCTTTTACGATATTCGCCGTCGTCTTCTTCATAATCGTCTTCCACTACTACGTCCGACGCCGCCGACGAATTCGTCAGCTGAGCCTGAGCAGACGCCTGGCCGATCAACCAGTTTATCAAATCAGCGCTCAAGTTTTGCCGGTTGATGCCGAATTACGTTCTCCGAACGGCGACCATCAGGGGCTTGACTCTTCCGTCATAGCTTCGATTCCTAAGCTCTGGTACAAGCAAACGGACCAGTTCAACGACGGCGAAGCAGTAGAGTGCTCGGTTTGCTTAGCTATTATTGTCGAAGATGCAGCCGTTAGGGTTTTGCCTAACTGCAAGCACGTGTTTCATGTTGATTGTGTTGATACTTGGTTCGCTTCCAACACCACTTGTCCGATTTGCCGTACTGTTGTTGACCTCACTGTGCAGTCCGGCGGTGGCGCTGTTCAACCCACGGCACCGCCGGTAATAGAGAGTGGCGGGACGGTATGA 543 0.5193 MGFADGEDHSLGFGLRVMIVAAFTIFAVVFFIIVFHYYVRRRRRIRQLSLSRRLADQPVYQISAQVLPVDAELRSPNGDHQGLDSSVIASIPKLWYKQTDQFNDGEAVECSVCLAIIVEDAAVRVLPNCKHVFHVDCVDTWFASNTTCPICRTVVDLTVQSGGGAVQPTAPPVIESGGTV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01082 180 PANTHER RING-H2 FINGER PROTEIN ATL16 15 158 IPR044600 GO:0016567|GO:0016740
Accr5g01082 180 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Accr5g01082 180 Pfam Ring finger domain 109 152 IPR001841 -
Accr5g01082 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 157 IPR013083 -
Accr5g01082 180 CDD RING-H2_EL5-like 109 152 - -
Accr5g01082 180 SUPERFAMILY RING/U-box 88 158 - -
Accr5g01082 180 SMART ring_2 110 151 IPR001841 -
Accr5g01082 180 FunFam E3 ubiquitin-protein ligase ATL6 72 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01082 Accr-Chr5 36402252 36402794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01082 16 156 C3H Transcription Factor Family AT2G42360 37.241 1.77e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01082 K19038 - gmx:100779105 175.252