Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01007 ATGTCACTATCAAAATCTCCGGTTGCTGCCAATGAGGATAGCGACCCACCGATGGAAATGGAAGTAGAGGAAGATCCCGAAGAAGAAGAATATGAAGAAGAAGATGCCGTGGAAGAAGAATATGAAGACGAGGAAGATCCCGAGGAAGAAGAATATGAAGAAGTTGAAGTAGAGGAAGAAGTGGAAGAGGAAGAAGAGAAGGGGGAGGAAGAGGAAAAAGAGGAGAGCAGGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGCAGACGAGGAGGAGGAGGAGGTGGTGGAGGTGGAGGAGGAGGAGGAGGAGGTGGCGATGGAGGAGGAGGCCGGCGAGGACAAATTTGAGGTGTCAGAACCTCCAGCAGATGCCGCTAAGGACCCTGAAGATTTGAGCCAACACATGGAGTCTGAGGGGCAAGAGAGGAACTTGAGGCTAGTTTCTTCTGTAGCAGTAAACCCTGATACAGTGTCTGCAGAAAATAATGACTCGTGTAAGGTTCTTACAATGGAAAAGGAAGATTTTCAGCTGGAACATGTGACTCGAAGCAGTCCAAATTCAAGAATTAATGTGGGTTCTGCTGAAGATGATAAACATCAAGGATTAGATGTTGCTAATGAAAGTAATGGATCCCCTCTACAATGTAAAACCTTGGAAGCATACAAAGAACCAAGTTGTGATAGCAAAGTTTACTTATGTGGTGCTAAAGAGTCTGGGACAATCAAGTCATCCAGTGATGCTGGAAAAGATGTGGCTACTGACATCCAGCGGAAAGGCTGCTCTGTTGAGAATGCCTGCATTAGCACTCAGAATTCTATGAACAAAATAAAGCAATCGGACACACATTCGGGGGATGAAATGAAGCAAATGACATCAAGATTTACTTCCCCTGATATGAGGACTCGAAGTCTTTCTCCCCCTGCTGGGATGAAAGATATAAACAAACGGCCAGCAATCATATGCAGCTTTTTTGCTAAAGGATGGTGTATCAAAGGTAGTTCATGTAGGTTTCTTCATATAAAAGATAATGTAAATAACACTGGCCAGCAGGCTGAAGGAGACATGTTTTCTACAAATTGCAAGAGAGAAAGGCAATCGGAGGAAGGCCTGAGAGGTCATGCTGAGACATCAGGAATGCCTGATGCTCGAGTTCCATTGGCTGCTTCATTGGTGAGCTCTTCTCTGCATTCTTCTGAATTTTCGGTAAAAGAGATCATCCAGGATGAACAAGAAGCAAGCCCGAGTCAGCGTCCATCTCAAGATAAACAGAAGTTTCCATTACTTTCGAAAGAGAACTTATCTTCTAAGAACCATGTCTTATCAATTGGTAGAGATAGTTCTACATCAAGGGATGTCTCGATTCCTGAAAATAGATCTATATTTAATGCATCAAACAACTATTTCAGCAGGAATCTCTCTTCTTATCCATCCTTTGTGGAGGGATTAGCTCCCATTGAAAACAGATATGCTTCCCAAGCTTCAGCTCCATCAAGTTATTCAATATCTTCAAATTTATCTGTTGGTGCAAGTACTTTGGATGCTCAAAAGCTGTTGAAAAGCGGCAAAGAGTATCATGCCCCTAGGTCCACTTTCTTGGGTTCGGAATGGGAGGAGATGCCTCTAACTAGTCAATCTGGAGTTTGGCTACATGCCACTGGATATAGAAGAAAAATATCTTCTTGTGATTGGGAGCCATCTGTACCTTTTCGACCATCATTTTTTATTACTTCAGCTGGTATATCATCTTCTGGAGATATGTATGACCCATTTCATCCTTGTGTTGAGATAACCAATATAGGAGATGGATCACTGAAAGCTTCCTTTTTCACTCATGGGCCTCCCATCCAGTCTTCATCTCAGGTGCGAACGTATGGTGATTGTGCTGTAGCTGGGGACAAGGTGGAAGATATTATCGACGACAAGAGTTCTGTTTCTTCTCATCACAGATTTTATGAGAATGAGGCAAACAAGCATTGTGCTCCTTCAGAAAAAGATGGCTGTGCACATGAAACAGAGACAACAGCCAGGACCTATCTAAACTCTCATAATGGTAAAGCAAGCATTGGAGAAAATACTGTTGCTGTTGAAGACAATATAAAAACTGAAGTTGAACAAACAGAGATTGGTGCAAGATATCAAGGTGAAGGATCGGGACTGAAAAAGAGAAGAGTAGATAAGGCTCAGAAAAACAATGAAATGAATGTTGATTTTCAGATGGATGGCAATATGCAGAATGATTCGAAGGCTGTAAAAATTTTTCGTGCAGCTCTTGTAGATTTAGTGAAAGAGTTGTTAAAACCATCTTGGCAAGAGGGCTATCTCAGCAAGGATGCACATAATAAAATAGTTAAGAAATCAGTTGACAAAGTTATTAGCACCCTACAACCCCACCAGATTCCGACCACCCTAGATGCAGTCAACCACTATATTTCTTCATCTCGATTAAAAATTGGAAAGCTTGTTGATGGATATGTCAATAAATACAGCAAGTCTTGA 2511 0.4241 MSLSKSPVAANEDSDPPMEMEVEEDPEEEEYEEEDAVEEEYEDEEDPEEEEYEEVEVEEEVEEEEEKGEEEEKEESREEEVEEEEEEVEEEADEEEEEVVEVEEEEEEVAMEEEAGEDKFEVSEPPADAAKDPEDLSQHMESEGQERNLRLVSSVAVNPDTVSAENNDSCKVLTMEKEDFQLEHVTRSSPNSRINVGSAEDDKHQGLDVANESNGSPLQCKTLEAYKEPSCDSKVYLCGAKESGTIKSSSDAGKDVATDIQRKGCSVENACISTQNSMNKIKQSDTHSGDEMKQMTSRFTSPDMRTRSLSPPAGMKDINKRPAIICSFFAKGWCIKGSSCRFLHIKDNVNNTGQQAEGDMFSTNCKRERQSEEGLRGHAETSGMPDARVPLAASLVSSSLHSSEFSVKEIIQDEQEASPSQRPSQDKQKFPLLSKENLSSKNHVLSIGRDSSTSRDVSIPENRSIFNASNNYFSRNLSSYPSFVEGLAPIENRYASQASAPSSYSISSNLSVGASTLDAQKLLKSGKEYHAPRSTFLGSEWEEMPLTSQSGVWLHATGYRRKISSCDWEPSVPFRPSFFITSAGISSSGDMYDPFHPCVEITNIGDGSLKASFFTHGPPIQSSSQVRTYGDCAVAGDKVEDIIDDKSSVSSHHRFYENEANKHCAPSEKDGCAHETETTARTYLNSHNGKASIGENTVAVEDNIKTEVEQTEIGARYQGEGSGLKKRRVDKAQKNNEMNVDFQMDGNMQNDSKAVKIFRAALVDLVKELLKPSWQEGYLSKDAHNKIVKKSVDKVISTLQPHQIPTTLDAVNHYISSSRLKIGKLVDGYVNKYSKS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01007 836 SMART c3hfinal6 320 346 IPR000571 GO:0046872
Accr5g01007 836 MobiDBLite consensus disorder prediction 1 148 - -
Accr5g01007 836 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 40 835 - -
Accr5g01007 836 Coils Coil 38 115 - -
Accr5g01007 836 SUPERFAMILY CCCH zinc finger 320 344 IPR036855 GO:0046872
Accr5g01007 836 MobiDBLite consensus disorder prediction 352 386 - -
Accr5g01007 836 MobiDBLite consensus disorder prediction 413 435 - -
Accr5g01007 836 MobiDBLite consensus disorder prediction 412 435 - -
Accr5g01007 836 MobiDBLite consensus disorder prediction 120 146 - -
Accr5g01007 836 ProSiteProfiles Zinc finger C3H1-type profile. 320 347 IPR000571 GO:0046872
Accr5g01007 836 MobiDBLite consensus disorder prediction 16 119 - -
Accr5g01007 836 Gene3D - 316 376 - -
Accr5g01007 836 MobiDBLite consensus disorder prediction 362 376 - -
Accr5g01007 836 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 325 344 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01007 Accr-Chr5 35726751 35735143 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr5g01007 zf-CCCH 8.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01007 - - pcin:129306230 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g01007 5 35726751 35735143 Accr5g01007 5 35726751 35735143 ECH