Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01004 ATGCCAGCACAGAAGCGCTTGTTCGACGCACCAGAAGAGGATGGTTTACACAGCGAGAGGAACCACCATGATAAGCTAGAAGATGGATTGGAATCCGATCGAAGCCCTTCGGAGAGCACCGGCGACAAAGAAGAGTTTGTTGTTATAAAATTGTCAGATGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGTAAAACAAGAACTGTAATGGAATGCCTGCACCGCTTTTGCAGAGAGTGTATAGACAAATCCATGCGACTCGGCAACAATGAGTGCCCTGCCTGCCGCACACATTGTGCTAGCCGACGCTCACTGAGAGATGACCCAAACTATGATGCTTTAATTTCTGCTCTCTATCCAGATATAGACAAGTATGAGCAGGAGGAATTGGCTCTGCATGAAGATGAAAAAGCTCGCAATAAGCAGATCCAAGAATCTATTGCTCAGACTCTTCAACGACAAGCAGAAGCGCTGGGTAAAAAACGCAATCCCAAAGCAATCACAAGGAGGTCACAAGGTAACTATCGAACTTCACATTCGAGGGCAAGAAGGAATTGTAGAAGTACGATTGAACTTCAGGGATCTGATGATACTGAGGACATGAATGATGATGATGGGGCTAAGGGTTCTTCTTCTGGTGATGAGCTGATGGAAATCAGATCAAAAAGATGTAAAAGAGCGCCAGAAGCACAATTTCCTCCACTCTCTGCAACCACTGCTGCAGATGGTGCCAGTGATGAAAATGCTCCTGAAGTGAGTAGAGAATTCTTGAGTCCTTCTAGTACACTTGCCTGGGGAAAAAATGGTCACCGGAGTCACACCCGAGTCAATGGCAAGAATGCCAGAAATAGTCGCATTGCCAAATTGATTGATAATCTCCGTAGCCTAGAAGAAAATGATGATGAGTTGGGTGTCTGCCTCATGCTTGTGCCTTATGACGAGAAAAGGACACCAAGTTTGCAGCAGCCATACCTCTGCTGCAGACCTACATTGTCCGTCAGGCACCTGTGCCAGTATGTTGCCCTTCAAACAGCTGTACAGGTTGATGAGGTTGAGATATGCTTGGTAAAAGAGCATCAAGCCAACATTATTAGAGCTGCAGGCTCAGTAGATCCATGCAAAGATAATTTGCAAGTGTTGAGAGAGCAGGAAACTTTGGCCGAACTTAAGCCTGATAATTTTAGCTGTGGCCATCTGCTTATGGCATATAAGAGGAAACTGTTGAACTCAACTGCGGCTAGCTTGAGGTGA 1263 0.4576 MPAQKRLFDAPEEDGLHSERNHHDKLEDGLESDRSPSESTGDKEEFVVIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEQEELALHEDEKARNKQIQESIAQTLQRQAEALGKKRNPKAITRRSQGNYRTSHSRARRNCRSTIELQGSDDTEDMNDDDGAKGSSSGDELMEIRSKRCKRAPEAQFPPLSATTAADGASDENAPEVSREFLSPSSTLAWGKNGHRSHTRVNGKNARNSRIAKLIDNLRSLEENDDELGVCLMLVPYDEKRTPSLQQPYLCCRPTLSVRHLCQYVALQTAVQVDEVEICLVKEHQANIIRAAGSVDPCKDNLQVLREQETLAELKPDNFSCGHLLMAYKRKLLNSTAASLR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01004 420 Coils Coil 137 157 - -
Accr5g01004 420 CDD RING-HC_RING1-like 57 122 - -
Accr5g01004 420 MobiDBLite consensus disorder prediction 208 231 - -
Accr5g01004 420 Coils Coil 283 303 - -
Accr5g01004 420 PANTHER OS11G0578200 PROTEIN 16 410 IPR044592 -
Accr5g01004 420 SMART ring_2 60 99 IPR001841 -
Accr5g01004 420 SUPERFAMILY RING/U-box 47 131 - -
Accr5g01004 420 MobiDBLite consensus disorder prediction 7 43 - -
Accr5g01004 420 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Accr5g01004 420 MobiDBLite consensus disorder prediction 1 43 - -
Accr5g01004 420 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Accr5g01004 420 MobiDBLite consensus disorder prediction 159 254 - -
Accr5g01004 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 130 IPR013083 -
Accr5g01004 420 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01004 Accr-Chr5 35713714 35717813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01004 58 203 C3H Transcription Factor Family AT2G30580 28.289 1.11e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01004 K10695 - qsa:O6P43_031861 527.709