Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00998 ATGGCTGCATCTGCTGCAGCTCTCAGTTCCCTCTCTTCTCTCTCCCTTCCCTCTTCTTCCCGCTTCTCTCTCTTCTCCACCGCCAAATTCACCTTCTCTCTCCTCCCCAAAACCCCACAACCATTTCTCTCTACCTCCTCATCCCCCATTATCCCCAAACCCAAATCCACGTCCTCCGATGACTTTGATACCTCCTTCTTCGACAATGTAAGGCCAGAAGAAGACGTTGTCTTCAACCCTCCGGAACCTCCCGAAGGCTTCGTTCCCCCTCCTCCCGTCGACGACGGTCCGATGGAGACCGAAGAGGAAATCGCCGCCGCTTATGAGGAGCTTTACGGACCCGCATTCAGCGGTGTTTCTGTTCTGGGAAACGATGTGTATGTAATGGACTCCAAATTGAAAAAAGATACAGGGTTTCGCTCCAAGGGGAAGAAAGGTAAGGTTAAGGATGGATTTGAAGAAAAAATTGTACAGATCAGAAGGGTGACCAAGGTTGTACAAGGAGGGAAGAAGATGACTTACAGGATAGTTATGATCGTGGGTAACAAGAAAGGCCAAGTGGGTGTAGGAGTTGGGAAAGCAATGGACGTTTCAGAAGCACTTCAGAAATCTGCTGTAAATGCAAGGCGGAATATCATCACAGTGCCTATGACTAAGTACCTGACTTTCCCACATAGATCTGAGGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCTGCTTCACCTGGTACCGGTGTCATCGCAGGTGGATCTGTGAGAATTGTTCTAGAAATGGCAGGCGTTGAGAATGCTTTGGGAAAGCAATTAGGGAGCGATAATGCCCTCAACAATGCTAGGGCAACTGTTGTTGCTGTGCAGAAAATGAGGCAGTTCCGTGAAGTCGCCGAGGAGCGAGAGACGCACAGAGTACTTATTTCCACAGTTTCACGGTATGATCATGGCTAG 948 0.4905 MAASAAALSSLSSLSLPSSSRFSLFSTAKFTFSLLPKTPQPFLSTSSSPIIPKPKSTSSDDFDTSFFDNVRPEEDVVFNPPEPPEGFVPPPPVDDGPMETEEEIAAAYEELYGPAFSGVSVLGNDVYVMDSKLKKDTGFRSKGKKGKVKDGFEEKIVQIRRVTKVVQGGKKMTYRIVMIVGNKKGQVGVGVGKAMDVSEALQKSAVNARRNIITVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSDNALNNARATVVAVQKMRQFREVAEERETHRVLISTVSRYDHG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00998 315 Pfam Ribosomal protein S5, N-terminal domain 152 216 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Accr5g00998 315 SUPERFAMILY dsRNA-binding domain-like 149 217 - -
Accr5g00998 315 MobiDBLite consensus disorder prediction 38 60 - -
Accr5g00998 315 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 143 304 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Accr5g00998 315 Hamap 30S ribosomal protein S5 [rpsE]. 129 308 IPR005712 GO:0003735|GO:0006412|GO:0015935
Accr5g00998 315 ProSitePatterns Ribosomal protein S5 signature. 169 201 IPR018192 -
Accr5g00998 315 FunFam 30S ribosomal protein S5 217 308 - -
Accr5g00998 315 Pfam Ribosomal protein S5, C-terminal domain 229 299 IPR005324 GO:0003735|GO:0005840|GO:0006412
Accr5g00998 315 Gene3D - 148 213 - -
Accr5g00998 315 NCBIfam 30S ribosomal protein S5 150 301 IPR005712 GO:0003735|GO:0006412|GO:0015935
Accr5g00998 315 SUPERFAMILY Ribosomal protein S5 domain 2-like 222 300 IPR020568 -
Accr5g00998 315 ProSiteProfiles S5 double stranded RNA-binding domain profile. 152 215 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Accr5g00998 315 Gene3D - 219 307 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00998 Accr-Chr5 35617985 35620741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00998 152 292 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 25.503 2.34e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00998 K02988 - qsa:O6P43_012664 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g00998 5 35617985 35620741 Accr5g00998 5 35617985 35620741 ECH