Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00997 ATGGCCTCAACTCTCCACTGGGACCCCGATAAAATGCTTCAACTTTACATTCTGGATTACATGAAGAGAAGGGGAATGGATACGAGCGCTGAAATTTTCCAAAAGGAATCAGATGGTATTGACGCTTCCGTTGTGATTCGGTCTCCAGAAGGTTTCTTGCATGAATGGTGGTCTGTTTTCTATGACATGTATGCCTCAAGGAATCTGGAGCATGAGGACATTGGGCCAGAAGCCTGTAGTAATGTGGAACTTCAAAGGACCAATAGCGGAAGAAGAAATCTCCCTCCTAGAATCCCTCAGCTATCTAAGCAGAGACCTCAACTGCTTCAAATCGACCCCACCGCTAACGATATGATGGAGCAACCGTCTGCCTGCCTGTTGCCACCGAATGTATATGAAAGAGAGTATCTTGGATATCTAGCCGAAGATTCTAATCCAAGTTTACAACTTATCAATGCAAAGAGACTGAAGTTTGAGGATAGTGGAATTGGCCTTCAGTCAGGAAGTAATATACCCGTGGACCCCCTGGGTCAAGTACAAAGAGGAGTTGATGAAGGTCTCAATCTGGTGCCGCTGAATGGATATCCTTTAGATGTAGGTGATGGAGTACTCACTTCACTTTTGCTAGCACCAAACTATGAGCAACAGTTTCAGGGGCTAGATACACAAAATCTGCAAGCGCTTGCATGCACCCCTAGGAGTCAGACATCCATATGTCTTGGAAACTCTTCTATTTGCATCAGCCAAGATCCAAAGATTCCCCTGGTTCAAACTGATTTATGTAACGATATGCAGGACTGTATGAATGCAGCAGATGGGAGACCTGTAGATCGAAACATTGTGCCTTTGTCTGATGAGAATGAACATGCTGATCAAGGAGCTGGACCTTCCAGGAGTCTGAAACTTACTTTTGCGACATGTGATATGAGTAAAGGTTTTTCATTTGAGGAGGTTGGGTGTCTTCACTCATGCAAAAGCAAAGTTTTGTCCTGCCATTTTTCGTCTGACGGGAAGGTTTTAGCAAGTGCTGGACATGAGAAGAAGGTTTTCGTTTGGAATATGGAAACTTTTGATTGTGTTAGTACTTCAGATGCACATTCACGTCTCATTACTGATGTTCGGTTCAGACCAGGCTCAACCATATTTGCAACATCTTCTGCTGATAAAACTATAAAAATATGGGATGCGGCCAAAGCAAACAAATCATTGTTTGAGCTTACCGGGCATGCTGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAGGTGGACCTTCTTTGCTCCTGCGATAGCAATGGCATTATGCGATTGTGGAATGTCAACCAAGGCGTTTGTGTGCGTATAAATAAGGGAGGCAGTAAACAAGTCAGATTCCAGCCTCGAATTGCCAACTTTTTGGCTGCTGCTGCAGGAAATATTATTAATTTAATTGATATCGAGGATGACAGACTTTTATACAAGCTGAAGGGACATGTTAAAGATGTTATTTCCATTTGTTGGGACGCAACGGGAAACTATCTTGCTTCTGTAAGTGAAGATAGTGCACGTGTGTGGTCCGTTATGTCTGAAGGAAAATGCATACAAGTACTGCATTCAAATAGAAACAAGTTTCAATCGTGCATATTTCATCCTGTTTATTGTAACCTCTTAATCATTGGTTGCAACCAGTCCCTGGAGTTTTGGATTCCAACTGAGGGCTGTAAATTATGGACTCATACT 1719 0.4282 MASTLHWDPDKMLQLYILDYMKRRGMDTSAEIFQKESDGIDASVVIRSPEGFLHEWWSVFYDMYASRNLEHEDIGPEACSNVELQRTNSGRRNLPPRIPQLSKQRPQLLQIDPTANDMMEQPSACLLPPNVYEREYLGYLAEDSNPSLQLINAKRLKFEDSGIGLQSGSNIPVDPLGQVQRGVDEGLNLVPLNGYPLDVGDGVLTSLLLAPNYEQQFQGLDTQNLQALACTPRSQTSICLGNSSICISQDPKIPLVQTDLCNDMQDCMNAADGRPVDRNIVPLSDENEHADQGAGPSRSLKLTFATCDMSKGFSFEEVGCLHSCKSKVLSCHFSSDGKVLASAGHEKKVFVWNMETFDCVSTSDAHSRLITDVRFRPGSTIFATSSADKTIKIWDAAKANKSLFELTGHAEQVMSLDFHPRKVDLLCSCDSNGIMRLWNVNQGVCVRINKGGSKQVRFQPRIANFLAAAAGNIINLIDIEDDRLLYKLKGHVKDVISICWDATGNYLASVSEDSARVWSVMSEGKCIQVLHSNRNKFQSCIFHPVYCNLLIIGCNQSLEFWIPTEGCKLWTHT 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00997 573 CDD WD40 325 561 - -
Accr5g00997 573 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Accr5g00997 573 SUPERFAMILY WD40 repeat-like 314 561 IPR036322 GO:0005515
Accr5g00997 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 362 IPR001680 GO:0005515
Accr5g00997 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 395 IPR001680 GO:0005515
Accr5g00997 573 Pfam WD domain, G-beta repeat 402 439 IPR001680 GO:0005515
Accr5g00997 573 Pfam WD domain, G-beta repeat 358 395 IPR001680 GO:0005515
Accr5g00997 573 Pfam WD domain, G-beta repeat 484 519 IPR001680 GO:0005515
Accr5g00997 573 Pfam WD domain, G-beta repeat 320 353 IPR001680 GO:0005515
Accr5g00997 573 SMART WD40_4 314 353 IPR001680 GO:0005515
Accr5g00997 573 SMART WD40_4 399 439 IPR001680 GO:0005515
Accr5g00997 573 SMART WD40_4 481 519 IPR001680 GO:0005515
Accr5g00997 573 SMART WD40_4 523 562 IPR001680 GO:0005515
Accr5g00997 573 SMART WD40_4 356 395 IPR001680 GO:0005515
Accr5g00997 573 ProSitePatterns Trp-Asp (WD) repeats signature. 426 440 IPR019775 -
Accr5g00997 573 Gene3D - 454 573 IPR015943 GO:0005515
Accr5g00997 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 443 - -
Accr5g00997 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 448 IPR001680 GO:0005515
Accr5g00997 573 Gene3D - 296 453 IPR015943 GO:0005515
Accr5g00997 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 395 - -
Accr5g00997 573 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 567 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00997 Accr-Chr5 35611347 35617923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00997 298 518 U-box Gene Family AT2G33340 24.454 1.94e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr5g00997 WD40 0.067 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00997 - - pcin:129304456 964.14