Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00996 ATGGCCTCAACTCTCCACTGGGACCCCGATAAAATGCTTCAACTTTACATTCTGGATTACATGAAGAGAAGGGGAATGGATACGAGCGCTGAAATTTTCCAAAAGGAATCAGATGGTATTGACGCTTCCGTTGTGATTCGGTCTCCAGAAGGTTTCTTGCATGAATGGTGGTCTGTTTTCTATGACATGTATGCCTCAAGGAATCTGGAGCATGAGGACATTGGGCCAGAAGCCTGTAGTAATGTGGAACTTCAAAGGACCAATAGCGGAAGAAGAAATCTCCCTCCTAGAATCCCTCAGCTATCTAAGCAGAGACCTCAACTGCTTCAAATCGACCCCACCGCTAACGATATGATGGAGCAACCGTCTGCCTGCCTGTTGCCACCGAATGTATATGAAAGAGAGTATCTTGGATATCTAGCCGAAGATTCTAATCCAAGTTTACAACTTATCAATGCAAAGAGACTGAAGTTTGAGGATAGTGGAATTGGCCTTCAGTCAGGAAGTAATATACCCGTGGACCCCCTGGGTCAAGTACAAAGAGGAGTTGATGAAGGTCTCAATCTGGTGCCGCTGAATGGATATCCTTTAGATGTAGGTGATGGAGTACTCACTTCACTTTTGCTAGCACCAAACTATGAGCAACAGTTTCAGGGGCTAGATACACAAAATCTGCAAGCGCTTGCATGCACCCCTAGGAGTCAGACATCCATATGTCTTGGAAACTCTTCTATTTGCATCAGCCAAGATCCAAAGATTCCCCTGGTTCAAACTGATTTATGTAACGATATGCAGGACTGTATGAATGCAGCAGATGGGAGACCTGTAGATCGAAACATTGTGCCTTTGTCTGATGAGAATGAACATGCTGATCAAGGAGCTGGACCTTCCAGGAGTCTGAAACTTACTTTTGCGACATGTGATATGAGTAAAGGTTTTTCATTTGAGGAGGTTGGGTGTCTTCACTCATGCAAAAGCAAAGTTTTGTCCTGCCATTTTTCGTCTGACGGGAAGGTTTTAGCAAGTGCTGGACATGAGAAGAAGGTTTTCGTTTGGAATATGGAAACTTTTGATTGTGTTAGTACTTCAGATGCACATTCACGTCTCATTACTGATGTTCGGTTCAGACCAGGCTCAACCATATTTGCAACATCTTCTGCTGATAAAACTATAAAAATATGGGATGCGGCCAAAGCAAACAAATCATTGTTTGAGCTTACCGGGCATGCTGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAGGTGGACCTTCTTTGCTCCTGCGATAGCAATGGCATTATGCGATTGTGGAATGTCAACCAAGGCGTTTGTGTGCGTATAAATAAGGGAGGCAGTAAACAAGTCAGATTCCAGCCTCGAATTGCCAACTTTTTGGCTGCTGCTGCAGGAAATATTATTAATTTAATTGATATCGAGGATGACAGACTTTTATACAAGCTGAAGGGACATGTTAAAGATGTTATTTCCATTTGTTGGGACGCAACGGGAAACTATCTTGCTTCTGTAAGTGAAGATAGTGCACGTGTGTGGTCCGTTATGTCTGAAGGAAAATGCATACAAGTACTGCATTCAAATAGAAACAAGTTTCAATCGTGCATATTTCATCCTGTTTATTGTAACCTCTTAATCATTGGTTGCAACCAGTCCCTGGAGTTTTGGATTCCAACTGAGGGCTGTAAATTATGGACTCATACTGCTCACAAGGACGTAATCGCTGGACTAGGAGCTTCCCCAGAAAATCAAATGATGGCCTCAGCTAGCCATGATCATACCGTGAAACTGTGGAAATAA 1815 0.4303 MASTLHWDPDKMLQLYILDYMKRRGMDTSAEIFQKESDGIDASVVIRSPEGFLHEWWSVFYDMYASRNLEHEDIGPEACSNVELQRTNSGRRNLPPRIPQLSKQRPQLLQIDPTANDMMEQPSACLLPPNVYEREYLGYLAEDSNPSLQLINAKRLKFEDSGIGLQSGSNIPVDPLGQVQRGVDEGLNLVPLNGYPLDVGDGVLTSLLLAPNYEQQFQGLDTQNLQALACTPRSQTSICLGNSSICISQDPKIPLVQTDLCNDMQDCMNAADGRPVDRNIVPLSDENEHADQGAGPSRSLKLTFATCDMSKGFSFEEVGCLHSCKSKVLSCHFSSDGKVLASAGHEKKVFVWNMETFDCVSTSDAHSRLITDVRFRPGSTIFATSSADKTIKIWDAAKANKSLFELTGHAEQVMSLDFHPRKVDLLCSCDSNGIMRLWNVNQGVCVRINKGGSKQVRFQPRIANFLAAAAGNIINLIDIEDDRLLYKLKGHVKDVISICWDATGNYLASVSEDSARVWSVMSEGKCIQVLHSNRNKFQSCIFHPVYCNLLIIGCNQSLEFWIPTEGCKLWTHTAHKDVIAGLGASPENQMMASASHDHTVKLWK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00996 604 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Accr5g00996 604 Gene3D - 455 604 IPR015943 GO:0005515
Accr5g00996 604 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 362 IPR001680 GO:0005515
Accr5g00996 604 Gene3D - 296 454 IPR015943 GO:0005515
Accr5g00996 604 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 395 IPR001680 GO:0005515
Accr5g00996 604 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 604 IPR044716 GO:0003714
Accr5g00996 604 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 572 604 - -
Accr5g00996 604 ProSiteProfiles Trp-Asp (WD) repeats profile. 572 604 IPR001680 GO:0005515
Accr5g00996 604 ProSitePatterns Trp-Asp (WD) repeats signature. 426 440 IPR019775 -
Accr5g00996 604 PRINTS G protein beta WD-40 repeat signature 591 604 IPR020472 -
Accr5g00996 604 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Accr5g00996 604 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
Accr5g00996 604 CDD WD40 325 604 - -
Accr5g00996 604 SMART WD40_4 314 353 IPR001680 GO:0005515
Accr5g00996 604 SMART WD40_4 399 439 IPR001680 GO:0005515
Accr5g00996 604 SMART WD40_4 565 604 IPR001680 GO:0005515
Accr5g00996 604 SMART WD40_4 481 519 IPR001680 GO:0005515
Accr5g00996 604 SMART WD40_4 356 395 IPR001680 GO:0005515
Accr5g00996 604 SMART WD40_4 523 562 IPR001680 GO:0005515
Accr5g00996 604 Pfam WD domain, G-beta repeat 402 439 IPR001680 GO:0005515
Accr5g00996 604 Pfam WD domain, G-beta repeat 484 519 IPR001680 GO:0005515
Accr5g00996 604 Pfam WD domain, G-beta repeat 358 395 IPR001680 GO:0005515
Accr5g00996 604 Pfam WD domain, G-beta repeat 568 604 IPR001680 GO:0005515
Accr5g00996 604 Pfam WD domain, G-beta repeat 320 353 IPR001680 GO:0005515
Accr5g00996 604 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 443 - -
Accr5g00996 604 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 448 IPR001680 GO:0005515
Accr5g00996 604 SUPERFAMILY WD40 repeat-like 315 604 IPR036322 GO:0005515
Accr5g00996 604 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00996 Accr-Chr5 35611347 35618019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00996 298 518 U-box Gene Family AT2G33340 24.454 2.13e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr5g00996 WD40 0.00082 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00996 - - pcin:129304456 1023.85