Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00987 ATGGACAACAACAACCTTCTAGCTTCTTCATCCGGAGGAAGCGACAGAAAAGTGATAGAGAGAAACCGAAGAAGCCAAATGAGGGCTCTATGCTCCCAGCTCAGCTCACTCGTCCCGCGTCAATCCTCATCACCCGAGGTGATTTCGCTGTCAGATCAGCTGGGTGAAGCAGCCACCTACATCAAGAAGCTTCAGATAAAGTTGGAGAAGATGAATCAGAAGAAGCTCAGCCTTATTGGAACGACCAGCAAAGAGCCAAACATTATAAGTGAGAGTCCAATTAGTAATAACAATAATAGAGGGATCGTTATGGGGTCAAAATCACCCCAAGTTGAGATTCACCAAATGGGTTCAACTTTAGAGGTTTCTGTAATTACTGGTTTGGATTGCCACTTCATTTTCGGCGATTTCATTCGCATCCTTCATGATGAACAGGCCGATGTTGCTAATGCCAGTTACTCAGTCGTTCAAGATACTGTTTTTCATACCATTCACTGTCAGGTAGGAGAATGTGGTGATAGAGCAGGGAGGATATCAGAGAGATTAAAGAGGTTTGTGTACGGTTCTGGTGCTTTTTGA 579 0.4421 MDNNNLLASSSGGSDRKVIERNRRSQMRALCSQLSSLVPRQSSSPEVISLSDQLGEAATYIKKLQIKLEKMNQKKLSLIGTTSKEPNIISESPISNNNNRGIVMGSKSPQVEIHQMGSTLEVSVITGLDCHFIFGDFIRILHDEQADVANASYSVVQDTVFHTIHCQVGECGDRAGRISERLKRFVYGSGAF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00987 192 Gene3D - 11 79 IPR036638 GO:0046983
Accr5g00987 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 14 187 - -
Accr5g00987 192 Pfam Helix-loop-helix DNA-binding domain 17 65 IPR011598 GO:0046983
Accr5g00987 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 64 IPR011598 GO:0046983
Accr5g00987 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 78 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00987 Accr-Chr5 35374141 35375155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00987 11 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.458 2.75e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g00987 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00987 - - pcin:129305410 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g00987 5 35374141 35375155 Accr5g00987 5 35374141 35375155 CCT