Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00980 ATGAAAGTCACGAACACGCCGTCGCAGGACCTCGTTTATACCAATCTCGCCTGCTGCTCACCCTCTGATCTTCAGAAATTCGCTGTCCCGGGTTTCAAAAACATCTTCCTCGCTCTGGTCGGGGACTCCTTCGTCTTCTCTCTCGCAGCTCACGGAAAGGTTGACGATGGTGAAATTGCACTAAATTCAATTCAGCGTCGATGTGTCAAAGTTTCTGCTGCTGAGTGGATACCTGTGAGCAGATTCGTTCCACCTGACAATTTCAACCTAGCAATGTTAACCCTTGAGCTGGACTTCTTAAAAAAAGGAGGTAAAAGCGAACAGATTGATGCAGTTCAGCTGGGTAAGCATCTCAAAAAGAGATTTGTCAACCAGGTCATGACTGCAGGGCAGAAGGTGTTGTTTGAGTATCATGGAAATAATTATAGTTTCACAGTCAGTCAAGCTGCTGTTGAGGGTCAAGAAAAAAATTCTCTTGAAAGAGGGATGCTATTAGATGACACATACATTGTATTTGAAACATCACGTGATAGTGGAATAAAGATTGTCAATCAGCGTGAGGCTGCGACAAGCAACATTTTTAAGCAGAAAGAGTTCAATCTTCAGTCACTGGGTATTGGAGGTTTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCGCCCCATGTTACTTCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGACCTCCTGGCACTGGAAAAACTCTTATGGCACGTCAAATTGGAAAAATTCTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCCGAAGTCTTGAGTAAATTTGTTGGTGAAACTGAGAAGAATGTTAGGGACCTCTTTGCTGATGCTGAAAGGGATCAGAAGACTCTAGGGGATGAAAGTGAATTGCATGTCATAATTTTTGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGCACAGGAGTTCATGATAGTATTGTGAATCAACTTCTCACTAAGATAGACGGTGTGGAGTCGCTGAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTGGATGAAGCTCTTTTGAGACCGGGGCGACTAGAAGTCCAAGTTGAGATAAGCCTTCCTGATGAAAATGGCCGGTTGCAGATTCTTCAAATTCATACTAACAAGATGAAGGACAATTCTTTTTTATCTCCTGATGTGAATCTTCAAGAGCTCGCTGCTCGAACCAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAGAGTGCAGTTTCATTTGCTTTAAATAGACAACTTAGTCTAGATGATCTCACCAAGCCAGTGGAGGAAGAGAATATCAAGGTTACAATGGATGATTTTTTGAATGCACTTCATGAAGTTGTTCCTGCATTTGGAGCTTCAACTGATGACCTTGAAAGATGCAGACTTGGTGGCATGGTGGATTGTGTTGATAGACATAAGCACATTTACCAACGAGCTATGCTACTTGTGGAGCAAGTTAAAGTGAGCAAAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGCCCAAGTGGCAGTGGTAAAACTGCACTTGCAGCTACTGTTGGCATCGACAGCGATTTCCCATATGTCAAGATTGTTTCAGCTGAATCAATGATTGGTCTCCATGAAAGCACTAAATGTGCACATATTATCAAGTTTTTCGAGGATGCATACAAGTCACCATTGAGCGTCATTATTCTTGATGACATTGAGAGATTATTGGAGTATGTAGCCATTGGTCCACGGTTCTCAAATTTGATTTCTCAGACACTAATGGTCCTACTAAAACGGCTTCCTCCAAAGGGTAAAAAACTCCTGGTTATTGGTACAACAAGTCAACTGATTTTCTTGGACTCAATTGGATTCTGTGATACTTTCTCTGTCACTTACCACGTTCCTACATTGAACACAAATGACGTGAAGAAGGTTCTGAAACAGTTGAATGTCTTTGATGAGGGTGATGTTGATGATGCTGCGGAAGCCTTGAATGATACGCCTATCAAGAAACTGTACACGTTGATTGAGATGGCAGCCCAAGGTGAACATGGTGGATCTGCAGAAGCAATCTATTCTGGGAAAGAGAAGATTAAGCTATCTCACTTCTATGATTGCCTTCAGGATGTCGTCCGAGTATGA 2190 0.421 MKVTNTPSQDLVYTNLACCSPSDLQKFAVPGFKNIFLALVGDSFVFSLAAHGKVDDGEIALNSIQRRCVKVSAAEWIPVSRFVPPDNFNLAMLTLELDFLKKGGKSEQIDAVQLGKHLKKRFVNQVMTAGQKVLFEYHGNNYSFTVSQAAVEGQEKNSLERGMLLDDTYIVFETSRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAERDQKTLGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKDNSFLSPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEENIKVTMDDFLNALHEVVPAFGASTDDLERCRLGGMVDCVDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAHIIKFFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLMVLLKRLPPKGKKLLVIGTTSQLIFLDSIGFCDTFSVTYHVPTLNTNDVKKVLKQLNVFDEGDVDDAAEALNDTPIKKLYTLIEMAAQGEHGGSAEAIYSGKEKIKLSHFYDCLQDVVRV 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00980 729 FunFam Vesicle-fusing ATPase protein 1 82 - -
Accr5g00980 729 SMART AAA_5 518 639 IPR003593 GO:0016887
Accr5g00980 729 SMART AAA_5 238 385 IPR003593 GO:0016887
Accr5g00980 729 CDD RecA-like_NSF-SEC18_r1-like 205 381 - -
Accr5g00980 729 Pfam Cell division protein 48 (CDC48), domain 2 108 152 IPR004201 -
Accr5g00980 729 Gene3D - 1 82 - -
Accr5g00980 729 Pfam AAA+ lid domain 409 464 IPR041569 -
Accr5g00980 729 FunFam Vesicular-fusion ATPase SEC18 194 384 - -
Accr5g00980 729 Pfam ATPase family associated with various cellular activities (AAA) 523 631 IPR003959 GO:0005524|GO:0016887
Accr5g00980 729 Pfam ATPase family associated with various cellular activities (AAA) 242 382 IPR003959 GO:0005524|GO:0016887
Accr5g00980 729 Gene3D - 384 471 - -
Accr5g00980 729 Gene3D - 481 651 IPR027417 -
Accr5g00980 729 Gene3D - 85 182 - -
Accr5g00980 729 FunFam vesicle-fusing ATPase isoform X1 480 651 - -
Accr5g00980 729 SUPERFAMILY ADC-like 1 86 IPR009010 -
Accr5g00980 729 PANTHER VESICULAR-FUSION PROTEIN NSF 1 728 IPR039812 GO:0016887|GO:0035494
Accr5g00980 729 FunFam Vesicle-fusing ATPase 384 471 - -
Accr5g00980 729 Gene3D - 191 383 IPR027417 -
Accr5g00980 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 481 IPR027417 -
Accr5g00980 729 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Accr5g00980 729 FunFam Vesicle-fusing ATPase 86 182 - -
Accr5g00980 729 SUPERFAMILY Cdc48 domain 2-like 85 187 IPR029067 -
Accr5g00980 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 693 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00980 Accr-Chr5 35256265 35266239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00980 206 457 Calmodulin-binding Proteins AT3G56690 33.858 6.23e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00980 K06027 - gmx:100779259 1259.97