Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00979 ATGGCGAGTTGGTTCGGGTCCGCTCAGACATCCATGAAAGTCACGAACACGCCGTCGCAGGACCTCGTTTATACCAATCTCGCCTGCTGCTCACCCTCTGATCTTCAGAAATTCGCTGTCCCGGGTTTCAAAAACATCTTCCTCGCTCTGGTCGGGGACTCCTTCGTCTTCTCTCTCGCAGCTCACGGAAAGGTTGACGATGGTGAAATTGCACTAAATTCAATTCAGCGTCGATGTGTCAAAGTTTCTGCTGCTGAGTGGATACCTGTGAGCAGATTCGTTCCACCTGACAATTTCAACCTAGCAATGTTAACCCTTGAGCTGGACTTCTTAAAAAAAGGAGGTAAAAGCGAACAGATTGATGCAGTTCAGCTGGGTAAGCATCTCAAAAAGAGATTTGTCAACCAGGTCATGACTGCAGGGCAGAAGGTGTTGTTTGAGTATCATGGAAATAATTATAGTTTCACAGTCAGTCAAGCTGCTGTTGAGGGTCAAGAAAAAAATTCTCTTGAAAGAGGGATGCTATTAGATGACACATACATTGTATTTGAAACATCACGTGATAGTGGAATAAAGATTGTCAATCAGCGTGAGGCTGCGACAAGCAACATTTTTAAGCAGAAAGAGTTCAATCTTCAGTCACTGGGTATTGGAGGTTTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCGCCCCATGTTACTTCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGACCTCCTGGCACTGGAAAAACTCTTATGGCACGTCAAATTGGAAAAATTCTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCCGAAGTCTTGAGTAAATTTGTTGGTGAAACTGAGAAGAATGTTAGGGACCTCTTTGCTGATGCTGAAAGGGATCAGAAGACTCTAGGGGATGAAAGTGAATTGCATGTCATAATTTTTGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGCACAGGAGTTCATGATAGTATTGTGAATCAACTTCTCACTAAGATAGACGGTGTGGAGTCGCTGAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTGGATGAAGCTCTTTTGAGACCGGGGCGACTAGAAGTCCAAGTTGAGATAAGCCTTCCTGATGAAAATGGCCGGTTGCAGATTCTTCAAATTCATACTAACAAGATGAAGGACAATTCTTTTTTATCTCCTGATGTGAATCTTCAAGAGCTCGCTGCTCGAACCAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAGAGTGCAGTTTCATTTGCTTTAAATAGACAACTTAGTCTAGATGATCTCACCAAGCCAGTGGAGGAAGAGAATATCAAGGTTACAATGGATGATTTTTTGAATGCACTTCATGAAGTTGTTCCTGCATTTGGAGCTTCAACTGATGACCTTGAAAGATGCAGACTTGGTGGCATGGTGGATTGTGTTGATAGACATAAGCACATTTACCAACGAGCTATGCTACTTGTGGAGCAAGTTAAAGTGAGCAAAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGCCCAAGTGGCAGTGGTAAAACTGCACTTGCAGCTACTGTTGGCATCGACAGCGATTTCCCATATGTCAAGATTGTTTCAGCTGAATCAATGATTGGTCTCCATGAAAGCACTAAATGTGCACATATTATCAAGTTTTTCGAGGATGCATACAAGTCACCATTGAGCGTCATTATTCTTGATGACATTGAGAGATTATTGGAGTATGTAGCCATTGGTCCACGGTTCTCAAATTTGATTTCTCAGACACTAATGGTCCTACTAAAACGGCTTCCTCCAAAGGGTAAAAAACTCCTGGTTATTGGTACAACAAGTCAACTGATTTTCTTGGACTCAATTGGATTCTGTGATACTTTCTCTGTCACTTACCACGTTCCTACATTGAACACAAATGACGTGAAGAAGGTTCTGAAACAGTTGAATGTCTTTGATGAGGGTGATGTTGATGATGCTGCGGAAGCCTTGAATGATACGCCTATCAAGAAACTGTACACGTTGATTGAGATGGCAGCCCAAGGTGAACATGGTGGATCTGCAGAAGCAATCTATTCTGGGAAAGAGAAGATTAAGCTATCTCACTTCTATGATTGCCTTCAGGATGTCGTCCGAGTATGA 2223 0.4238 MASWFGSAQTSMKVTNTPSQDLVYTNLACCSPSDLQKFAVPGFKNIFLALVGDSFVFSLAAHGKVDDGEIALNSIQRRCVKVSAAEWIPVSRFVPPDNFNLAMLTLELDFLKKGGKSEQIDAVQLGKHLKKRFVNQVMTAGQKVLFEYHGNNYSFTVSQAAVEGQEKNSLERGMLLDDTYIVFETSRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAERDQKTLGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKDNSFLSPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEENIKVTMDDFLNALHEVVPAFGASTDDLERCRLGGMVDCVDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAHIIKFFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLMVLLKRLPPKGKKLLVIGTTSQLIFLDSIGFCDTFSVTYHVPTLNTNDVKKVLKQLNVFDEGDVDDAAEALNDTPIKKLYTLIEMAAQGEHGGSAEAIYSGKEKIKLSHFYDCLQDVVRV 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00979 740 SUPERFAMILY Cdc48 domain 2-like 96 198 IPR029067 -
Accr5g00979 740 Gene3D - 202 394 IPR027417 -
Accr5g00979 740 ProSitePatterns AAA-protein family signature. 364 382 IPR003960 GO:0005524|GO:0016887
Accr5g00979 740 FunFam Vesicular-fusion ATPase SEC18 205 395 - -
Accr5g00979 740 FunFam Vesicle-fusing ATPase 97 193 - -
Accr5g00979 740 FunFam vesicle-fusing ATPase isoform X1 491 662 - -
Accr5g00979 740 Pfam Cell division protein 48 (CDC48), domain 2 119 163 IPR004201 -
Accr5g00979 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 492 IPR027417 -
Accr5g00979 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 704 IPR027417 -
Accr5g00979 740 Pfam AAA+ lid domain 420 475 IPR041569 -
Accr5g00979 740 Gene3D - 8 93 - -
Accr5g00979 740 PANTHER VESICULAR-FUSION PROTEIN NSF 9 739 IPR039812 GO:0016887|GO:0035494
Accr5g00979 740 FunFam Vesicle-fusing ATPase protein 9 93 - -
Accr5g00979 740 Gene3D - 492 662 IPR027417 -
Accr5g00979 740 Gene3D - 395 482 - -
Accr5g00979 740 Gene3D - 96 193 - -
Accr5g00979 740 Pfam ATPase family associated with various cellular activities (AAA) 534 642 IPR003959 GO:0005524|GO:0016887
Accr5g00979 740 Pfam ATPase family associated with various cellular activities (AAA) 253 393 IPR003959 GO:0005524|GO:0016887
Accr5g00979 740 CDD RecA-like_NSF-SEC18_r1-like 216 392 - -
Accr5g00979 740 SMART AAA_5 529 650 IPR003593 GO:0016887
Accr5g00979 740 SMART AAA_5 249 396 IPR003593 GO:0016887
Accr5g00979 740 SUPERFAMILY ADC-like 11 97 IPR009010 -
Accr5g00979 740 FunFam Vesicle-fusing ATPase 395 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00979 Accr-Chr5 35256232 35266239 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00979 217 468 Calmodulin-binding Proteins AT3G56690 33.858 7.43e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00979 K06027 - gmx:100779259 1265.75