Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00969 ATGGCCTTTGAGCACTACATTTCACAAGAATGGAAAAGCATTCCAAGTTCCATGACGAAAGAGACTGGAAATCATGATGGTTGTTTCGATTGCAACATTTGCTTTGACTTTGTTATTGAACCTGTGGTCACCCTCTGTGGCCACCTCTATTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCATCTGATGAGCACCCACAATGCCCAGTCTGCAGGGCTGATATATGTCCCACCACCTTGGTCCCCCTATACAGCCGGGGCCAAACCCCGGCTCCTCCCGAGCAAGACACAAAGGCATCACGTGAGATTTTGATACCGCCAAGACCACGAGCTTTTGGCGTTCAAGCTCTGATGTTAGCATCATCATCATCATCTCAAGTTGGTCATCATCAGCGTCATCCTTATCATTATCCTCATCACAGTCATCAACATTTCAGCTCTCCTCTGTACCAAGTGGAGGATGCCTCATCACAAGTGCTGAATCTCAGTACTACTCTTACACCTCAAGGATTTCACCACCCTGTGGCTGGGATGGTTTACGCCACGGTGTTTGGCAGCCCAGAAAATATATACGCGTACCCGAATTCTTATCAGCAGATGGGCAGCAGCAGCCCAAGACTGAGAAGGCAGGTGATGCAAGCAGACAAGTCATTGAATAGAATCTCAATCTTCCTCTTTTGCTGTTTTGTTTTATGTCTCATTGTATTTTGA 729 0.4719 MAFEHYISQEWKSIPSSMTKETGNHDGCFDCNICFDFVIEPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCRADICPTTLVPLYSRGQTPAPPEQDTKASREILIPPRPRAFGVQALMLASSSSSQVGHHQRHPYHYPHHSHQHFSSPLYQVEDASSQVLNLSTTLTPQGFHHPVAGMVYATVFGSPENIYAYPNSYQQMGSSSPRLRRQVMQADKSLNRISIFLFCCFVLCLIVF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00969 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
Accr5g00969 242 SUPERFAMILY RING/U-box 26 90 - -
Accr5g00969 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 108 IPR013083 -
Accr5g00969 242 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Accr5g00969 242 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
Accr5g00969 242 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Accr5g00969 242 SMART ring_2 31 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00969 Accr-Chr5 35127223 35127951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00969 6 228 C3H Transcription Factor Family AT4G27470 38.428 1.10e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00969 K10666 - qsa:O6P43_031837 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g00969 5 35127223 35127951 Accr5g00969 5 35127223 35127951 ECH