Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00944 ATGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCTTTTACTAACGAACAGGCAGTTGCAGCATTCTTCAGTCATGTTATGGCAGCTATTGGAGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTTTATATTAATCACGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCATTAGACGGAATCATATTTGAGGGAGTTGCTGTGAGGGTCCGTAGGCCTACAGACTATAATCCTTCAGTCGCTGCTGCTCTAGGTCCGAGCCAACCAAGCCCAAACCTCAATTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGTGGAACTGAGGGACCTGATCGCATCTTTGTCGGTGGGCTACCGTACTACTTTACTGAAGAACAAATAAAAGAATTACTCCAAGCTTTTGGACCTCTCAGAGCATTTGATCTAGTTAGAGATAAAGACACAGGAAATTCTAAAGGATATGGTTTTTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCTCTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACAGTCAGCGTACAGTCTAAAACAGAACAGGAGAATATCCTTGCACAGGCACAACAGCGTATTGCTATTCAGAAAATAGCCATGGAAGCTGGCGGGCTAAATATTCGAGGAGTGGAAAGCGCATTAACCAAGCTCAATGAAAATGCTACCAAAGTTTTATGCTTAACTGAGGCCATTACTGCGGATCAACTACAGGATGATGAAGAGTACGGAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTTGTTATCCCGCGTCCAAAAGATGGCATCGACGAGGCTTCCCCGGGAGTTGGGAAGGTGTTCTTGGAATATGCTGATACTGGTGCAAGTTTGGCTGCAAGAAATGCACTAAATGGGAGGAAATTTGGTGGCAATGTTGTGAGCGCCTTCTATTATTCTGAAGAAAAATATTATAGCATGGAGTATGATGATGTATAA 1101 0.4423 MMSVQPMMQQATRHARRVYVGGLPPFTNEQAVAAFFSHVMAAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSVAAALGPSQPSPNLNLSAVGLVAGAIGGTEGPDRIFVGGLPYYFTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVSVQSKTEQENILAQAQQRIAIQKIAMEAGGLNIRGVESALTKLNENATKVLCLTEAITADQLQDDEEYGEILEDMRDECCKFGTLINVVIPRPKDGIDEASPGVGKVFLEYADTGASLAARNALNGRKFGGNVVSAFYYSEEKYYSMEYDDV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00944 366 CDD RRM2_U2AF65 136 212 - -
Accr5g00944 366 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 3 363 IPR006529 GO:0003723|GO:0005634|GO:0006397
Accr5g00944 366 FunFam U2 snRNP auxiliary factor large subunit 113 225 - -
Accr5g00944 366 FunFam U2 snRNP auxiliary factor large subunit 11 112 - -
Accr5g00944 366 Gene3D - 11 112 IPR012677 -
Accr5g00944 366 PANTHER RNA-BINDING PROTEIN 2 363 - -
Accr5g00944 366 SUPERFAMILY RNA-binding domain, RBD 137 356 IPR035979 GO:0003676
Accr5g00944 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 207 IPR000504 GO:0003723
Accr5g00944 366 CDD RRM1_U2AF65 15 97 - -
Accr5g00944 366 CDD RRM3_U2AF65 262 350 - -
Accr5g00944 366 SMART rrm1_1 137 210 IPR000504 GO:0003723
Accr5g00944 366 SMART rrm1_1 270 351 IPR000504 GO:0003723
Accr5g00944 366 SMART rrm1_1 17 95 IPR000504 GO:0003723
Accr5g00944 366 FunFam U2 snRNP auxiliary factor large subunit 259 364 - -
Accr5g00944 366 SUPERFAMILY RNA-binding domain, RBD 16 101 IPR035979 GO:0003676
Accr5g00944 366 Gene3D - 130 232 IPR012677 -
Accr5g00944 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Accr5g00944 366 Gene3D - 258 364 IPR012677 -
Accr5g00944 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00944 Accr-Chr5 34759939 34765172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00944 138 344 Eukaryotic Initiation Factors Gene Family AT1G71770 23.810 1.45e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00944 K12837 - qsa:O6P43_031823 557.37