Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00943 ATGTCTGACGTTGAAAATCAAACCTCTTCGAAAAATGACGATCGTCTTGATTCAAAGCCTGACAGGGGCCACCGCGACAAGCCCAATTCTCATGGATCTGATCATGAGAGGCGAAGGGTGAGAAAGCGGGATGGAGAGACAAAATCTTATCATGCAAACGATCACAAGGAGTTTAAAAATGGAGGCTTTAGAAGAAAAGGCGGTTATGACAATTATGATCGTCATCAGAACTCTGATTATGACAGGCATCGTGGTCACGTTCGAGATGGAGAAATGAGGCACAGATATGAAAAACGATCAAGTTACAGATCCAAGCGGGAATCTAGATCTCGCTCCAGATCCCCTCCTCTTTCAGAAAGCAAAAGGATAAGTGGTTTTGACATGGCACCACCATCTGCTGCTGGAGTACCTGTTGCTGCTGTTGATAGTGCAGGGCAAATCCCGGGGATCACTCATCCAGTAACTCTGCAGAATGTGCCATCATTTGGGACGTCACAGGTTGGAGCATTTTCCATGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCTTTTACTAACGAACAGGCAGTTGCAGCATTCTTCAGTCATGTTATGGCAGCTATTGGAGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTTTATATTAATCACGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCATTAGACGGAATCATATTTGAGGGAGTTGCTGTGAGGGTCCGTAGGCCTACAGACTATAATCCTTCAGTCGCTGCTGCTCTAGGTCCGAGCCAACCAAGCCCAAACCTCAATTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGTGGAACTGAGGGACCTGATCGCATCTTTGTCGGTGGGCTACCGTACTACTTTACTGAAGAACAAATAAAAGAATTACTCCAAGCTTTTGGACCTCTCAGAGCATTTGATCTAGTTAGAGATAAAGACACAGGAAATTCTAAAGGATATGGTTTTTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCTCTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACAGTCAGCGTACAGTCTAAAACAGAACAGGAGAATATCCTTGCACAGGCACAACAGCGTATTGCTATTCAGAAAATAGCCATGGAAGCTGGCGGGCTAAATATTCGAGGAGTGGAAAGCGCATTAACCAAGCTCAATGAAAATGCTACCAAAGTTTTATGCTTAACTGAGGCCATTACTGCGGATCAACTACAGGATGATGAAGAGTACGGAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTTGTTATCCCGCGTCCAAAAGATGGCATCGACGAGGCTTCCCCGGGAGTTGGGAAGGTGTTCTTGGAATATGCTGATACTGGTGCAAGTTTGGCTGCAAGAAATGCACTAAATGGGAGGAAATTTGGTGGCAATGTTGTGAGCGCCTTCTATTATTCTGAAGAAAAATATTATAGCATGGAGTATGATGATGTATAA 1614 0.4486 MSDVENQTSSKNDDRLDSKPDRGHRDKPNSHGSDHERRRVRKRDGETKSYHANDHKEFKNGGFRRKGGYDNYDRHQNSDYDRHRGHVRDGEMRHRYEKRSSYRSKRESRSRSRSPPLSESKRISGFDMAPPSAAGVPVAAVDSAGQIPGITHPVTLQNVPSFGTSQVGAFSMMSVQPMMQQATRHARRVYVGGLPPFTNEQAVAAFFSHVMAAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSVAAALGPSQPSPNLNLSAVGLVAGAIGGTEGPDRIFVGGLPYYFTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVSVQSKTEQENILAQAQQRIAIQKIAMEAGGLNIRGVESALTKLNENATKVLCLTEAITADQLQDDEEYGEILEDMRDECCKFGTLINVVIPRPKDGIDEASPGVGKVFLEYADTGASLAARNALNGRKFGGNVVSAFYYSEEKYYSMEYDDV 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00943 537 Gene3D - 429 534 IPR012677 -
Accr5g00943 537 CDD RRM1_U2AF65 186 268 - -
Accr5g00943 537 CDD RRM3_U2AF65 433 521 - -
Accr5g00943 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 270 IPR000504 GO:0003723
Accr5g00943 537 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 21 534 IPR006529 GO:0003723|GO:0005634|GO:0006397
Accr5g00943 537 FunFam U2 snRNP auxiliary factor large subunit 284 396 - -
Accr5g00943 537 SUPERFAMILY RNA-binding domain, RBD 308 527 IPR035979 GO:0003676
Accr5g00943 537 FunFam U2 snRNP auxiliary factor large subunit 182 283 - -
Accr5g00943 537 CDD RRM2_U2AF65 307 383 - -
Accr5g00943 537 MobiDBLite consensus disorder prediction 8 116 - -
Accr5g00943 537 Gene3D - 182 283 IPR012677 -
Accr5g00943 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Accr5g00943 537 Gene3D - 301 403 IPR012677 -
Accr5g00943 537 SMART rrm1_1 188 266 IPR000504 GO:0003723
Accr5g00943 537 SMART rrm1_1 441 522 IPR000504 GO:0003723
Accr5g00943 537 SMART rrm1_1 308 381 IPR000504 GO:0003723
Accr5g00943 537 MobiDBLite consensus disorder prediction 1 134 - -
Accr5g00943 537 FunFam U2 snRNP auxiliary factor large subunit 430 535 - -
Accr5g00943 537 PANTHER RNA-BINDING PROTEIN 13 534 - -
Accr5g00943 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 378 IPR000504 GO:0003723
Accr5g00943 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 260 IPR000504 GO:0003723
Accr5g00943 537 SUPERFAMILY RNA-binding domain, RBD 92 267 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00943 Accr-Chr5 34759939 34768369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00943 309 515 Eukaryotic Initiation Factors Gene Family AT1G71770 23.810 3.33e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00943 K12837 - qsa:O6P43_031823 664.84