Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00942 ATGTCTGACGTTGAAAATCAAACCTCTTCGAAAAATGACGATCGTCTTGATTCAAAGCCTGACAGGGGCCACCGCGACAAGCCCAATTCTCATGGATCTGATCATGAGAGGCGAAGGGTGAGAAAGCGGGATGGAGAGACAAAATCTTATCATGCAAACGATCACAAGGAGTTTAAAAATGGAGGCTTTAGAAGAAAAGGCGGTTATGACAATTATGATCGTCATCAGAACTCTGATTATGACAGGCATCGTGGTCACGTTCGAGATGGAGAAATGAGGCACAGATATGAAAAACGATCAAGTTACAGATCCAAGCGGGAATCTAGATCTCGCTCCAGATCCCCTCCTCTTTCAGAAAGCAAAAGGATAAGTGGTTTTGACATGGCACCACCATCTGCTGCTGGAGTACCTGTTGCTGCTGGGCAAATCCCGGGGATCACTCATCCAGTAACTCTGCAGAATGTGCCATCATTTGGGACGTCACAGGTTGGAGCATTTTCCATGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCTTTTACTAACGAACAGGCAGTTGCAGCATTCTTCAGTCATGTTATGGCAGCTATTGGAGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTTTATATTAATCACGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCATTAGACGGAATCATATTTGAGGGAGTTGCTGTGAGGGTCCGTAGGCCTACAGACTATAATCCTTCAGTCGCTGCTGCTCTAGGTCCGAGCCAACCAAGCCCAAACCTCAATTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGTGGAACTGAGGGACCTGATCGCATCTTTGTCGGTGGGCTACCGTACTACTTTACTGAAGAACAAATAAAAGAATTACTCCAAGCTTTTGGACCTCTCAGAGCATTTGATCTAGTTAGAGATAAAGACACAGGAAATTCTAAAGGATATGGTTTTTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCTCTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACAGTCAGCGTACAGTCTAAAACAGAACAGGAGAATATCCTTGCACAGGCACAACAGCGTATTGCTATTCAGAAAATAGCCATGGAAGCTGGCGGGCTAAATATTCGAGGAGTGGAAAGCGCATTAACCAAGCTCAATGAAAATGCTACCAAAGTTTTATGCTTAACTGAGGCCATTACTGCGGATCAACTACAGGATGATGAAGAGTACGGAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTTGTTATCCCGCGTCCAAAAGATGGCATCGACGAGGCTTCCCCGGGAGTTGGGAAGGTGTTCTTGGAATATGCTGATACTGGTGCAAGTTTGGCTGCAAGAAATGCACTAAATGGGAGGAAATTTGGTGGCAATGTTGTGAGCGCCTTCTATTATTCTGAAGAAAAATATTATAGCATGGAGTATGATGATGTATAA 1602 0.4488 MSDVENQTSSKNDDRLDSKPDRGHRDKPNSHGSDHERRRVRKRDGETKSYHANDHKEFKNGGFRRKGGYDNYDRHQNSDYDRHRGHVRDGEMRHRYEKRSSYRSKRESRSRSRSPPLSESKRISGFDMAPPSAAGVPVAAGQIPGITHPVTLQNVPSFGTSQVGAFSMMSVQPMMQQATRHARRVYVGGLPPFTNEQAVAAFFSHVMAAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSVAAALGPSQPSPNLNLSAVGLVAGAIGGTEGPDRIFVGGLPYYFTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVSVQSKTEQENILAQAQQRIAIQKIAMEAGGLNIRGVESALTKLNENATKVLCLTEAITADQLQDDEEYGEILEDMRDECCKFGTLINVVIPRPKDGIDEASPGVGKVFLEYADTGASLAARNALNGRKFGGNVVSAFYYSEEKYYSMEYDDV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00942 533 CDD RRM1_U2AF65 182 264 - -
Accr5g00942 533 CDD RRM3_U2AF65 429 517 - -
Accr5g00942 533 FunFam U2 snRNP auxiliary factor large subunit 178 279 - -
Accr5g00942 533 SUPERFAMILY RNA-binding domain, RBD 304 523 IPR035979 GO:0003676
Accr5g00942 533 Gene3D - 178 279 IPR012677 -
Accr5g00942 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 266 IPR000504 GO:0003723
Accr5g00942 533 MobiDBLite consensus disorder prediction 8 116 - -
Accr5g00942 533 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 21 530 IPR006529 GO:0003723|GO:0005634|GO:0006397
Accr5g00942 533 SUPERFAMILY RNA-binding domain, RBD 92 263 IPR035979 GO:0003676
Accr5g00942 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 374 IPR000504 GO:0003723
Accr5g00942 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 256 IPR000504 GO:0003723
Accr5g00942 533 SMART rrm1_1 304 377 IPR000504 GO:0003723
Accr5g00942 533 SMART rrm1_1 437 518 IPR000504 GO:0003723
Accr5g00942 533 SMART rrm1_1 184 262 IPR000504 GO:0003723
Accr5g00942 533 Gene3D - 297 399 IPR012677 -
Accr5g00942 533 MobiDBLite consensus disorder prediction 1 134 - -
Accr5g00942 533 FunFam U2 snRNP auxiliary factor large subunit 280 392 - -
Accr5g00942 533 Gene3D - 425 530 IPR012677 -
Accr5g00942 533 PANTHER RNA-BINDING PROTEIN 13 530 - -
Accr5g00942 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Accr5g00942 533 FunFam U2 snRNP auxiliary factor large subunit 426 531 - -
Accr5g00942 533 CDD RRM2_U2AF65 303 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00942 Accr-Chr5 34759939 34768369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00942 305 511 Eukaryotic Initiation Factors Gene Family AT1G71770 23.810 3.16e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00942 K12837 - qsa:O6P43_031823 666.381