Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00896 ATGGCGGACGAGGGGTTCGATTTCTCGGAACTGCTTGACGGAGATGCTGATGCTGATGATAAGTTGTGTATAGATCTTGACACCGTTTTGAATGTCCTTGATGAGGATTGTGATCTTTCGGAGAGTAGTCTGGAGGGTTTTTCGTTAAAAAATGTCTCACCTGGCGAATCCAGCAACCATGATAATTTTCAGCTTCAAAGTGGAAATTCTATGCTAGATAATGAAAATCAAGGACCTCCTTCACAGACTTGCTTATCCTCTCATGCTGTCACTGACAGTTTTCAGCAGTTCGATCGTCTGGATGGAAGTAACAAAATTTGCTACACAGGAAGGGAAGGTACTTTGGGATTTGAGATGCCAGCCCAATCTTCAGAACCTAGTGTCCCTGAGCCACATTTCAACAATATATCTGTTTGTGGGGATAATTTGAATTTGAATCCTCTCTGGAAGGAAAAAAATGAGAGCCAGCTCAAGCACGTGGGAGATGATGTTAAATCTGAACACGCTTCATACAGCCCTATGATTGAGAATGGTGATGTAAGTTTTGAAAAATATCGAGCTTTTGATGAGGATATGTGTGAAGGAGTTTCTGGGCAATTTGAAGCTGACTCGTGTACATCTTTTGAAATGCCATTCATTGATGCTAATGGAGGTTCACATTTTGCAACATCAACCATTTCTACTATTTTCCAAGGCTCCAATGCTCGTGGTGATTCTCATGACTACTTTTCACGCTTTCATGGTTACAAGGGCACAGATGATAGACTTCAAGCTTCTTATTTGCCTAATGTTTTTGGCTCTCAATTTTGGCCAAATCGAGAAGTTCTCGATAACGTGAAGGGTGAAAATGTGGAATATGTGGCTGATGCCTCACACGTGAGTAGTAACATGCATTCCAGTTCTACTGGGGGGATTTCATTTCAAGATAGTCAATTTATATCTGCAGATAGTGAATTTTCTTCATTTTTACATGGTAATTCTTCATACTTTCCATATGAAGACCAAGTCGTTTGTGTCAAAGGCGGAAGAGATGAACCAATTGCACCTTACCAGAATGCTGTTTATCGAGATTACTCGGACTTTAATGGAGGCCAAGAGATGAATCAGTTAAGTGGAGGCCTAGAGATGAATCAGTTAAATGGAGGCCTAGAGATGAATCAGTTAAATGGAGGCCTAGAGATGAATCAGTTAAATAGTGCTTTTCCTTCCATGGGAAGTCATATTTTTAATTTTTTAGAGTGTGAGGATAAAGATGCTGATATATTATCCCACATACATCATCATCAAGAGATGATTGATGGTACCAGCTTCAAATTTCCAAGAGACACTCCTAATTCGAACAGACATGACTTAGCCAAATCTTTGCTGAATGCCCAAGCATCAATTAGCACTGAGAAGAAGTTTGGTTATGTTAAAAATGAAGGGGAGGAAAAAATGATTCAATGTAGGAATTTTGATTACCACATCTCAGAAGCTGGTCCTGAATTGGTTCACAAAAGTTTTTCAGAGAAATCGTATGTTGAGGATGATGACTCTGATGTCTGTGTGATTGAAAGCATTAGTCATCCTGCACCGAAAAATGGATTACCAGACCATCAGAATTCTCATAAGATATCACAGCACTCTGCATATGGTGATTCACAACCGTACATGTCACGGAGCACAAGGCTGAAGGCCTGTGATGAGCAAAATATATTACAAGTTGCTCTACAAGATTTATCTCAGCCAAAGTCAGAAGCTTTACCCCCAGATGGATTGATGGCTGTTCCTCTGTTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAAGAAACATCAAGTTTTTACTGCTCAGGGGGAATCCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCGACTATTTCTTTGATACTGAAGGAAAGACCTCCAAAACTAACAGCTTGCCACAATACACAAAAGGGTGAATTAGAAACTTTTAATCTGGAGGTCGATGATGATGTTCTTGCTGAGGGTGGAGTGAAGGAAGACAAACCTAGTGTAAGTCCAATTGAAAGCAAGAACTTGGTGCAAACAAAGGGAAGGCCTTCTGCGGGAACACTTATTGTTTGTCCCACTAGCGTGCTAAGGCAATGGGATGAAGAGTTGAAAAATAAGGTAACCAGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACCAAAGATCCATATGTGCTGGCCGAGCATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCCCTGGTTGACAAAGATGAGGAGAAAGGAAATTCTGAAGTTCATGCTGGTCTACCGCCTAGTAAGAAAAGGAAATGCCCTCCTTCCAGTAGAAGTGGGAAGAAGAGATTGGACTCTGCCTTGCTTGAGGCTTCTGCCCGCCCTTTAGCGAAGGTGGCATGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAAAATTTCAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCGAAGCGAAGATGGTGCTTGTCTGGGACTCCTATCCAGAATGCTATTGATGATCTTTATAGTTATTTTAGATTTCTCAGATATGACCCTTATGCTGTATATAATACATTCCTTTCTTCTATTAAGATACCAATAAACAGAAATCCAAACAAAGGGTATAGAAAGCTACAAGCTGTGTTAAAGACCATAATGTTACGCAGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTACACTGCCACCTAAACGTGTGAAGTTGGAAAGAGTGGATTTTTCAAGAGAGGAGCGTGATTTCTATTCCAGACTGGAAGCTGATTCTCGTGCTCAATTTCAGGAATATGCTAATGCTGGAACTGTCAAGGAAAATTACGTTAACATTCTGTTGATGCTTTTACGCCTTCGACAAGCTTGTGATCATCCTCTGCTTGTTAAGCGCTATGATTCTAACACTTTATGGAGATCTTCAGTTGATATTGCAAAGAAGCTTCCTTGGGAAAAGCGAACATCACTTCTGACATGTTTGGAGTCCTCCTTGTCTCTTTGTGGCATCTGTAATGATTCTCCTGAAGATGCAGTCGTTTCAGCTTGCGGTCATGTTTTTTGTAACCAGTGCATTTCTGAACATCTCACTGGTGATGACAATCAGTGCCCTACTACAAATTGCAAAGCTCAATTGAATATGTCTTCAGTGTTTTCCAGAGCAACATTGAGTTGTTCTCTTTCTGACCAGGCTAGTGATAGTTTGGTTGGTTGCTCTGATTCTGAAGTGGAGGGTTATGGGCCCTGTTCTCAGAGTCAGCCATCTGATTCTTCAAAAATTAAGGCTGCTCTTGAGGTATTGAACTCATTGTGTAAGCCACAGGTTAATGCATCAAAAAATATTTCAATGCAGATTAATTCTGATGAATATAGTGACTGCCATGGAAATTCCTCTGATTGCAACAAGGTGAAATCCTTGAAGGATTTTCCTGAGAGCCAAAAGGTGTCAGATGGAAGTTCTAATGATTCGATTGTCAGAGAGAAAGCTATTGTATTTTCTCAGTGGACAAGGATGTTGGATTTGCTGGAAGCATGTCTTAAGAATTCTTCAATTCAGTATAGGAGGCTTGATGGCACAATGTCAGTTGCTGCTAGGGATAAAGCCGTTAAAGATTTTAATACTCTCCCAGAGGTAACAGTTATGATTATGTCTTTGAAAGCCGCCAGTCTTGGCCTCAACATGGTAGCTGCCTGCCATGTACTTTTGCTTGATCTATGGTGGAATCCAACAACAGAAGATCAAGCCATTGACAGAGCGCATCGAATTGGGCAGACTCGCCCTGTAACTGTTTTACGATTGACTGTGAAAGATACGGTTGAAGATCGTATTTTAGCACTGCAGCAAAAGAAGCGGAAGATGGTTGCATCTGCGTTTGGAGAAGATGAAACTGGTGGTCGTCAAAGTCGCCTCACAGTGGACGATTTAAAATATTTGTTCATGATGTGA 4005 0.4112 MADEGFDFSELLDGDADADDKLCIDLDTVLNVLDEDCDLSESSLEGFSLKNVSPGESSNHDNFQLQSGNSMLDNENQGPPSQTCLSSHAVTDSFQQFDRLDGSNKICYTGREGTLGFEMPAQSSEPSVPEPHFNNISVCGDNLNLNPLWKEKNESQLKHVGDDVKSEHASYSPMIENGDVSFEKYRAFDEDMCEGVSGQFEADSCTSFEMPFIDANGGSHFATSTISTIFQGSNARGDSHDYFSRFHGYKGTDDRLQASYLPNVFGSQFWPNREVLDNVKGENVEYVADASHVSSNMHSSSTGGISFQDSQFISADSEFSSFLHGNSSYFPYEDQVVCVKGGRDEPIAPYQNAVYRDYSDFNGGQEMNQLSGGLEMNQLNGGLEMNQLNGGLEMNQLNSAFPSMGSHIFNFLECEDKDADILSHIHHHQEMIDGTSFKFPRDTPNSNRHDLAKSLLNAQASISTEKKFGYVKNEGEEKMIQCRNFDYHISEAGPELVHKSFSEKSYVEDDDSDVCVIESISHPAPKNGLPDHQNSHKISQHSAYGDSQPYMSRSTRLKACDEQNILQVALQDLSQPKSEALPPDGLMAVPLLRHQRIALSWMVQKETSSFYCSGGILADDQGLGKTVSTISLILKERPPKLTACHNTQKGELETFNLEVDDDVLAEGGVKEDKPSVSPIESKNLVQTKGRPSAGTLIVCPTSVLRQWDEELKNKVTSKANLSVLVYHGSNRTKDPYVLAEHDVVLTTYSIVSMEVPKQPLVDKDEEKGNSEVHAGLPPSKKRKCPPSSRSGKKRLDSALLEASARPLAKVAWFRVVLDEAQSIKNFRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYNTFLSSIKIPINRNPNKGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKRVKLERVDFSREERDFYSRLEADSRAQFQEYANAGTVKENYVNILLMLLRLRQACDHPLLVKRYDSNTLWRSSVDIAKKLPWEKRTSLLTCLESSLSLCGICNDSPEDAVVSACGHVFCNQCISEHLTGDDNQCPTTNCKAQLNMSSVFSRATLSCSLSDQASDSLVGCSDSEVEGYGPCSQSQPSDSSKIKAALEVLNSLCKPQVNASKNISMQINSDEYSDCHGNSSDCNKVKSLKDFPESQKVSDGSSNDSIVREKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVAARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00896 1334 MobiDBLite consensus disorder prediction 532 548 - -
Accr5g00896 1334 Gene3D - 593 654 IPR038718 -
Accr5g00896 1334 Gene3D - 676 766 IPR038718 -
Accr5g00896 1334 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1172 1329 IPR001650 -
Accr5g00896 1334 SUPERFAMILY RING/U-box 1019 1064 - -
Accr5g00896 1334 Pfam SNF2-related domain 611 982 IPR000330 GO:0005524|GO:0140658
Accr5g00896 1334 Gene3D - 1066 1333 IPR027417 -
Accr5g00896 1334 SMART ultradead3 587 884 IPR014001 -
Accr5g00896 1334 MobiDBLite consensus disorder prediction 523 548 - -
Accr5g00896 1334 Pfam Helicase conserved C-terminal domain 1178 1276 IPR001650 -
Accr5g00896 1334 MobiDBLite consensus disorder prediction 759 792 - -
Accr5g00896 1334 CDD SF2_C_SNF 1179 1286 - -
Accr5g00896 1334 MobiDBLite consensus disorder prediction 50 84 - -
Accr5g00896 1334 SMART ring_2 1021 1059 IPR001841 -
Accr5g00896 1334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1014 1065 IPR013083 -
Accr5g00896 1334 SMART helicmild6 1193 1276 IPR001650 -
Accr5g00896 1334 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 463 1333 - -
Accr5g00896 1334 ProSiteProfiles Zinc finger RING-type profile. 1021 1060 IPR001841 -
Accr5g00896 1334 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 654 867 IPR014001 -
Accr5g00896 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 905 IPR027417 -
Accr5g00896 1334 ProSitePatterns Zinc finger RING-type signature. 1036 1045 IPR017907 -
Accr5g00896 1334 Pfam Zinc finger, C3HC4 type (RING finger) 1021 1058 - -
Accr5g00896 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 1333 IPR027417 -
Accr5g00896 1334 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 788 917 - -
Accr5g00896 1334 CDD DEXDc_SHPRH-like 591 905 - -
Accr5g00896 1334 Gene3D - 794 917 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00896 Accr-Chr5 33914218 33922924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00896 474 1333 RAD5 or RAD16-like Gene Family AT1G61140 59.932 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr5g00896 SNF2_N 5.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00896 - - lang:109332935 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g00896 5 33914218 33922924 Accr5g00896 5 33914218 33922924 CCT