Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00889 ATGGGGGAAGCCGATGAAGACGAAGTGCTTCTAAACCATGTCGACAAGTATGGCTCCAGAGACTGGAGCTCCATTCGACCCAAGGGCCTTCTTCAACGCACCGGAAAATCTTGCCGTCTCCATTGGGTCAATAAGTTTCGTCCAAATCTGAAGAATGGGTGCAAATTTTCGCCGGATGAAGAGAGGGTGGTGATTGAGATGCAAGCACAATTTGGGAACAAATGGGCAAAGAATGCGTCTTATTTGCCAGGAAGAACAGATAATGATGTTAAGAATTTCTGGAGTAGTAGGCAAAAGAGGATCGCTAGGATTCTACATTCTTCACCACCACCATCATCCAAATCAAAATCCAAAAGGAACCAAAATAAAGTCCCTTGTTTCCACAATGTTCCCCCTCTCGAGATAATTAAGGAATTTGTTCTTTACGGGTTTTTAATCAAAGTATGA 447 0.4318 MGEADEDEVLLNHVDKYGSRDWSSIRPKGLLQRTGKSCRLHWVNKFRPNLKNGCKFSPDEERVVIEMQAQFGNKWAKNASYLPGRTDNDVKNFWSSRQKRIARILHSSPPPSSKSKSKRNQNKVPCFHNVPPLEIIKEFVLYGFLIKV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00889 148 CDD SANT 4 44 IPR001005 -
Accr5g00889 148 Gene3D - 3 51 - -
Accr5g00889 148 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 42 IPR017930 -
Accr5g00889 148 PANTHER TRANSCRIPTION FACTOR DUO1 4 132 - -
Accr5g00889 148 SUPERFAMILY Homeodomain-like 4 94 IPR009057 -
Accr5g00889 148 Gene3D - 54 126 - -
Accr5g00889 148 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 102 IPR017930 -
Accr5g00889 148 ProSiteProfiles Myb-like domain profile. 5 46 IPR001005 -
Accr5g00889 148 Pfam Myb-like DNA-binding domain 4 61 - -
Accr5g00889 148 FunFam Transcription factor GAMYB 54 126 - -
Accr5g00889 148 ProSiteProfiles Myb-like domain profile. 55 98 IPR001005 -
Accr5g00889 148 SMART sant 4 48 IPR001005 -
Accr5g00889 148 SMART sant 52 100 IPR001005 -
Accr5g00889 148 CDD SANT 55 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00889 Accr-Chr5 33882940 33883555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00889 4 106 MYB Transcription Factor Family AT3G60460 83.495 3.25e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr5g00889 Myb_DNA-bind_6 5.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00889 K09422 - tcc:18614424 209.534