Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00863 ATGAACGATCTAATCTCAAAGTCCTTCAAGAAGTACAAGGACTTGCAGCAGCAGCAGTACCTGGACGATGTGGAGCAAGGGAAGGAGAGTTTAAGCCTGGACAAGTTCTTTGAGGATGTGGAGAATGTGAAGGAGGACATGAGATCTGTGGAGAAGCTGTACAGGAAATTGCAGGATGCTAATGAAGAGAGCAAGGTTGTGCACAATTCTAAGACCATGAAGGAACTCCGAGCCAGAATGGACAAGGACGTTGAGCAGGTCCTCAAGAGGGTCAAGATCATTAAGGGCAAGCTGGAGGCTCTAGAGAAGTCTAATGCTGCCAACAGAAACCTCCCTGGCTGTGGCCCAGGCTCGTCGGCCGACCGGACCCGAACCTCCGTGGTCTCCGGATTGGGGAAGAAGCTCAAGGACCTTATGGATGACTTCCAGGGTCTTAGAGCCAGGATGCAAAATGAATACAAGGAAACAGTTGAACGCAGGTATTTCACAATTACAGGGGAGAAAGCAGATGAAGATACCATAGAGAATTTGATAGCAAGTGGGGAGAGTGAGAGCTTCCTGCAGAGGGCAATTCAAGAACAGGGGAGGGGTCAGATAATGGACACCATATCAGAGATTCAAGAGAGGCATGATGCTGTGAAGGAGATAGAGAAGAATTTGATTGAGCTCCACCAAGTGTTCTTAGACATGGCGGCTCTGGTAGAGTCTCAGGGCCACCAGCTCAACAACATAGAGAGCCATGTGGCACATGCTAGTTCGTTCGTGAAGCGAGGCACTGAGGAGCTTCATGAGGCAAGGGAGCAACAGAAGACGTCCAGGAAGTGGACCTGCATTGCCATACTACTTGGACTTGTCCTCATCATTGTGCTCTTGTTTCCCATCTTGATTCAACTTTTGCCTCACCTGTTGGGCTAG 915 0.4929 MNDLISKSFKKYKDLQQQQYLDDVEQGKESLSLDKFFEDVENVKEDMRSVEKLYRKLQDANEESKVVHNSKTMKELRARMDKDVEQVLKRVKIIKGKLEALEKSNAANRNLPGCGPGSSADRTRTSVVSGLGKKLKDLMDDFQGLRARMQNEYKETVERRYFTITGEKADEDTIENLIASGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGHQLNNIESHVAHASSFVKRGTEELHEAREQQKTSRKWTCIAILLGLVLIIVLLFPILIQLLPHLLG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00863 304 Coils Coil 33 63 - -
Accr5g00863 304 Pfam SNARE domain 240 291 IPR000727 -
Accr5g00863 304 Gene3D - 194 297 - -
Accr5g00863 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Accr5g00863 304 Coils Coil 84 104 - -
Accr5g00863 304 Gene3D - 33 160 - -
Accr5g00863 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Accr5g00863 304 FunFam Syntaxin 132 196 296 - -
Accr5g00863 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Accr5g00863 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Accr5g00863 304 SMART tSNARE_6 198 265 IPR000727 -
Accr5g00863 304 CDD SynN 33 190 IPR006011 GO:0016020
Accr5g00863 304 Coils Coil 135 155 - -
Accr5g00863 304 CDD SNARE_syntaxin1-like 202 262 - -
Accr5g00863 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Accr5g00863 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Accr5g00863 304 PANTHER SYNTAXIN 41 285 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00863 Accr-Chr5 33546474 33547638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00863 1 303 SNARE and Associated Proteins AT1G61290 76.568 2.23e-174 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00863 K08486 - gmx:100818999 485.337