Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00843 ATGGAAGTTGAACATTCATGTGAAGTATACCCAGCAGACACCAACACCTCTATCTCCGCCGATCATTTCATCTCATCTTCCTCAAGTGAACAATACTACAAGATGGAGGTCGAATGCAAATGCTATCTTATTTTGGATGGTATCGCTTTAGACCGTTTCACTATTTCCAATGAGTGTGGCTTCTCAAACATCCTTAAGCAAGATGTAGAGAAATTCGTACATATGCTTCTTCCTTATTTTAATGTTCCTGTTCATTCTCGTCCTCGGACGGCTGCAAAAATCTTGGCATGTGCCCATCACATGGCGAATGTAACTCACAAGAACCACAAGATTATGGGCATGCGAGTTATTTTAACAAATACTACTCAAGTTTATCACTATGAATATAGTCTTCGTAGGGCTTTGATTGAACCAATGGATGAAGATGAAGATGGTCTGGGACCGATTCCGGCGAGCAAGTCAGCTGTTGAAGGGTTGGAAAGGGTGAAGTTGGAAGAACAAAAAGAAGAAGGGACTTTTATGATGGGAAAATTTTGTAACTGCACTATTTGCTTGGAGGATTTTTCAGTTGATTCAGAAGCTACTCGCATGCCTTGCTTGCACTTATTTCACAGCAAATGCATCATAAATTGGTTGGAGAATCGCAATACTTGTCCTCTGTGTCGTTTTCAAATGCCTACGTGTGATGATAATCAATGTGGACCAAGCTAG 711 0.4079 MEVEHSCEVYPADTNTSISADHFISSSSSEQYYKMEVECKCYLILDGIALDRFTISNECGFSNILKQDVEKFVHMLLPYFNVPVHSRPRTAAKILACAHHMANVTHKNHKIMGMRVILTNTTQVYHYEYSLRRALIEPMDEDEDGLGPIPASKSAVEGLERVKLEEQKEEGTFMMGKFCNCTICLEDFSVDSEATRMPCLHLFHSKCIINWLENRNTCPLCRFQMPTCDDNQCGPS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00843 236 CDD RING-H2_PA-TM-RING 181 222 - -
Accr5g00843 236 FunFam E3 ubiquitin-protein ligase RNF181 139 228 - -
Accr5g00843 236 SMART ring_2 181 221 IPR001841 -
Accr5g00843 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 86 226 - -
Accr5g00843 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 228 IPR013083 -
Accr5g00843 236 Pfam Ring finger domain 180 222 IPR001841 -
Accr5g00843 236 SUPERFAMILY RING/U-box 180 228 - -
Accr5g00843 236 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00843 Accr-Chr5 33225856 33226566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00843 135 231 C3H Transcription Factor Family AT5G01980 43.878 3.11e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00843 - K11982 pcin:129295769 332.798