Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00800 ATGGCTTCTGGTCTTTCTTTAACTCGAGGAAGTACTGCAGTATTCCCTGATGAGGTTCTCTATCGCACAGTGGTTGGTTCTCTTCAATATGTCACCATTACCAGGCCAGATATTTGTTTTGCCGTCAACAAGGTGTGCCAGTTCATGCAAACACCTTATATTGAACATTGGAAAGTGGTCAAACGCATTCTGAGCCTAAGGTCAGGATCTGGCAATTCATCTGGCTCCAAAGCATGTAGAGAAAAATTGAGGAGGGATCGACTGAATGACAGGTTCCTAGAATTGGGCTCTGTCCTTGATCCTGGCAGGCCTGCCAAAACAGACAAGGCTGTCATACTAAGTGACGTAGTTCGAAAGCTCTGTCAGCTACGAGAAGAGGCTCAGAAGCTTAGAGAGTCCAAGGAGAAGCTGCAGAAGAAAATAAACGATCTAAAGGCCGAGAAAAATGAGCTCCGCGACGAGAAGCAGCGACTAAAATCAGAGAGAGATAACATTGAGCGGCAGGTTAAAGCCGTGAATTCACAGTCAGGCTTCCGGCCTCGCCCTCCCACTCTCGCAGCAACTCCATTTCCAGTGCCAGGACAAGTTCTTGGGAGCAAGATGGTATCATTCATCGGTTACCCAGGAGTTTCAATGTGGCAGTTCTTACCCCCTGCTTCTGTTGACACCTCACAGGACCATGTACTTCGTCCCCCAGTTGCCTAA 705 0.4794 MASGLSLTRGSTAVFPDEVLYRTVVGSLQYVTITRPDICFAVNKVCQFMQTPYIEHWKVVKRILSLRSGSGNSSGSKACREKLRRDRLNDRFLELGSVLDPGRPAKTDKAVILSDVVRKLCQLREEAQKLRESKEKLQKKINDLKAEKNELRDEKQRLKSERDNIERQVKAVNSQSGFRPRPPTLAATPFPVPGQVLGSKMVSFIGYPGVSMWQFLPPASVDTSQDHVLRPPVA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00800 234 SMART finulus 78 129 IPR011598 GO:0046983
Accr5g00800 234 CDD bHLH_AtILR3_like 77 152 - -
Accr5g00800 234 Coils Coil 120 175 - -
Accr5g00800 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 123 IPR011598 GO:0046983
Accr5g00800 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 141 IPR036638 GO:0046983
Accr5g00800 234 PANTHER BHLH TRANSCRIPTION FACTOR 66 234 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Accr5g00800 234 Pfam Helix-loop-helix DNA-binding domain 76 123 IPR011598 GO:0046983
Accr5g00800 234 Gene3D - 76 152 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00800 Accr-Chr5 32539893 32542026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00800 67 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 62.722 1.29e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g00800 HLH 8.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00800 - - tcc:18597043 260.766