Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00790 ATGGGGAAGACCAAAGGTATGGGAGCTGCCTGCAAACTGCGGTCCCACCGCAGAAGGCAGAGGTGGGCTGATAAGTCATACAAGAAGTCTCACCTTGGAAATGAATGGAAGAAACCTTTTGCTAGATCTTCCCAGGGTATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCAAACTCTACCATTCGTAAGTGTGCCGGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCTGCCTTTGTCCCTAACGATGGTTGCTTGAAAGAAAGAGAAAGAGTTCTGCCATGGACATTGACCAGAAGAAAGAAAGAAAGAAAGAGAAAGAAAAAAAAAGTCAGAAACGGAAGTTACTGTAGCAACGGACGGAATTGTGATTTTTTTACAATTTGA 393 0.43 MGKTKGMGAACKLRSHRRRQRWADKSYKKSHLGNEWKKPFARSSQGIVLEKIGIEAKQPNSTIRKCAGVQLIKNGKKIAAFVPNDGCLKERERVLPWTLTRRKKERKRKKKKVRNGSYCSNGRNCDFFTI 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00790 130 SUPERFAMILY Nucleic acid-binding proteins 20 94 IPR012340 -
Accr5g00790 130 Gene3D - 25 119 IPR012340 -
Accr5g00790 130 FunFam 40S ribosomal protein S23 25 105 - -
Accr5g00790 130 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 89 IPR006032 GO:0003735|GO:0005840|GO:0006412
Accr5g00790 130 MobiDBLite consensus disorder prediction 1 28 - -
Accr5g00790 130 Pfam Ribosomal protein S12/S23 40 94 IPR006032 GO:0003735|GO:0005840|GO:0006412
Accr5g00790 130 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00790 Accr-Chr5 32382158 32382550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00790 1 102 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 73.832 2.30e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00790 K02973 - thj:104823243 164.081