Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00755 ATGGCTTCTTCCTGGTTCTTCATTCTCCTTCTTAAATGCCTTGATTTTCTTTCGTGGCCCGTCCTTGCTTTGGGCTATCCTCTATATGCTTCCATTGAAGCAATTGAGAGTGACAGCCATTCAGGAACTCGGAATTTGATCTCTTATTGGATTCTTCTCTCACTTATATACCTCTTTGAGTATGCTTTTCTCAAGCTTCTTCAATGGTTTCAGTATTGGTATTACATGAAGCTGATGATTGTAGCCTTCCTCGTAACGCCGGACTTTGGAAGAGCCGCATATATCTATAATCAACTCATTCGGTCTTGCATCTACATGAATCCACAAGCAGTCATAAGCAGATTCATGAGCTCGAAGAACATATTTGCCCAGAAAGAAGACTTTATAATGCAGGTTGAGAAGTATATAACACAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACAGAGCAAAGTCTTCATGCAGAAACAAGAAAAGCAGCTCCAACATGTACAGAGAAGATCGAGATCCTAAAGACAAATAGAGGAAGGCTTCTCATGGAACAGAAAGACATGAAAGATTTGGAGATGATTGAAAAGGAGGAAGTTTGTGAAGGCAAGCAAGCTAATAATGCAGCCTTGGATGGGCTCACATCAACTGAAAGCACTTCATCCGCCATGGAAACAATCGAAAAAATGCCGGCAGACACAGAATATGGAAAATATCCTCAGATTTCTGCAACTGAGAATGTACAGAAAGAGTGGACTTGTGCCATATGCCAGTTGACAGTGCCTTCTGAAGCTAACTTGAATTCCCACCTGCAAGGAAGGAAGCACAAGGCTGCTTCTGAAGCACTGAACACGAAAACTAAAGCAACACCGGTGAAAGACACAAGAAGCGGAGCATCTCCTCAGGTTTCTGCATCTCAGAATGAGCAGAAAATGTGGACATGTGAGATATGTCAGTTAAAGCTTTCTTACCCTGCTTTGAATTCCCATCTACTAGGAAAGAAGCACAAGGCTGCTAGTGAAGCACTTAATACGAAAACTGAAGGAACCGTGGGGTCAGACACCGGAAACGGAGCATCTCCTCATGTTTCTGCATCTACAAATGTACAGAAAACTTGGACTTGTGACATATGCCAGTTGACAATGTTCGAGGCTAATATGAATTCCCATCTGCAAGGAAAGAAGCATAAGGCCACTTGTGAAGCACTGAAGGTGAAAAGCCAAGCTTGTTGCTTAGAAAGTTTTGCAGAAGAATGA 1257 0.4224 MASSWFFILLLKCLDFLSWPVLALGYPLYASIEAIESDSHSGTRNLISYWILLSLIYLFEYAFLKLLQWFQYWYYMKLMIVAFLVTPDFGRAAYIYNQLIRSCIYMNPQAVISRFMSSKNIFAQKEDFIMQVEKYITQNGTEALEKLIASKNTEQSLHAETRKAAPTCTEKIEILKTNRGRLLMEQKDMKDLEMIEKEEVCEGKQANNAALDGLTSTESTSSAMETIEKMPADTEYGKYPQISATENVQKEWTCAICQLTVPSEANLNSHLQGRKHKAASEALNTKTKATPVKDTRSGASPQVSASQNEQKMWTCEICQLKLSYPALNSHLLGKKHKAASEALNTKTEGTVGSDTGNGASPHVSASTNVQKTWTCDICQLTMFEANMNSHLQGKKHKATCEALKVKSQACCLESFAEE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00755 418 SUPERFAMILY beta-beta-alpha zinc fingers 294 345 IPR036236 -
Accr5g00755 418 Pfam Zinc-finger of C2H2 type 313 336 - -
Accr5g00755 418 Pfam Zinc-finger of C2H2 type 252 276 - -
Accr5g00755 418 Pfam Zinc-finger of C2H2 type 373 396 - -
Accr5g00755 418 PANTHER OS06G0651300 PROTEIN-RELATED 203 291 - -
Accr5g00755 418 SUPERFAMILY beta-beta-alpha zinc fingers 244 286 IPR036236 -
Accr5g00755 418 SMART c2h2final6 313 336 IPR013087 -
Accr5g00755 418 SMART c2h2final6 373 396 IPR013087 -
Accr5g00755 418 SMART c2h2final6 252 276 IPR013087 -
Accr5g00755 418 Gene3D Classic Zinc Finger 358 402 - -
Accr5g00755 418 Gene3D Classic Zinc Finger 287 341 - -
Accr5g00755 418 Gene3D Classic Zinc Finger 229 281 - -
Accr5g00755 418 ProSitePatterns Zinc finger C2H2 type domain signature. 254 276 IPR013087 -
Accr5g00755 418 SUPERFAMILY beta-beta-alpha zinc fingers 362 408 IPR036236 -
Accr5g00755 418 SMART ZnF_U1_5 370 403 IPR003604 GO:0003676|GO:0008270
Accr5g00755 418 SMART ZnF_U1_5 310 343 IPR003604 GO:0003676|GO:0008270
Accr5g00755 418 SMART ZnF_U1_5 249 283 IPR003604 GO:0003676|GO:0008270
Accr5g00755 418 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00755 Accr-Chr5 31712923 31716215 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g00755 TB2_DP1_HVA22 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00755 - - pcin:129306216 454.521