Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00733 ATGACTGAGCTAGAAGCTTCCCGCTCCGACAAGAAGAAGAAGAAGCACCGTAGCAAAGACGAAACCGCCGACGTCCAGGATTCCGACTTCCTTATCAAACCCCAGAGCTACACTCCCACCATTGACACTTCTCAATGGCCGATTCTCCTAAAAAATTACGACCGCCTCAATGTACGAACCGGACACTACACTCCTATTCCCTCCGGTTACTCTCCTCTCAAGCGACCACTTCCCGAGTACATCAAATACGGTATCATGAATCTCGATAAACCTGCGAACCCCTCTTCCCACGAGGTCGTCGCTTGGATTAAACGGATCCTCCGGGTTGAGAAAACGGGTCACAGTGGTACTCTTGATCCTAAGGTCACTGGCAACCTCATAGTTTGCATCGATAGAGCCACGCGTTTGGTGAAGTCGCAGCAGGGAGCTGGGAAAGAGTACGTTTGTGTCGCTCGATTGCACTCTGCAGTGCCTGATGTCGGGAAGGTGTTGCGTGCGCTTGAGACGCTTACCGGAGCTGTGTTTCAGCGGCCGCCGTTGATTTCTGCGGTGAAGAGGCAGCTTAGGATCAGGACAATATATGAAAGTAAGCTTCTTGAGTATGATCCTGATAAGCATTTGGTTGTGTTTTGGATTTCTTGTGAGGCAGGTACGTATGTAAGGACTCTCTGTGTCCATCTGGGTTTGATTCTGGGTGTGGGAGGCCATATGCAGGAGCTTAGAAGGGTGCGTTCAGGTATTTTAGGAGAGAAAGATAATATGGTTTCTATGCATGATGTGTTGGATGCTCAATGGGTTTATGATAACTATAGAGATGAGGGTTATTTGAGAAGGGTTGTTATGCCTCTGGAAGTAATATTAACGAGTTATAAGAGATTAGTTGTTAAGGATTCTGCTGTTAATGCTATTTGTTATGGAGCAAAGCTGATGATTCCTGGGTTACTTAGGTTTGAGAATGATATTGAGGTAGGGGAGGAAGTAGTGCTAATGACTACCAAAGGTGAAGCAGTTGCTTTGGGAATTGCAGAGATGACTACTGCTGTAATGGCTACTTGTGATCATGGTGTGGTAGCTAAGATCAAAAGAGTGGTTATGGATAGAGATACCTATCCGAGGAAATGGGGTCTAGGACCAAGAGCGGCCATGAAGAAGAAGTTAATTGCAGAAGGGAAGCTAGATAAGCGTGGGAAGCCAAACGAGAATACTCCTCAAGAGTGGCTGAGGAATGTAGTTTTGCCAACTGGTGGGGATTCTATCATTGCTGGTATGTACGCTTCAGCTAAACCAGATGCTAAAGTTGAGAGTAAGGAGGATGGGCAAGAGCGTAAAAGAAAACATGTTGGAAGTGATGATGCTGCTTCAGTGCCCTCTAAGAAGACCAAAACTGAAGAAGTTGAAGAAGCTGAAAGGGAAGAAGTAGTGAAGATCAAGAAGGTAAAAGAGGATGTAGTGGAGGTCGAAGTTGATAAGAAGGAGAAGAAGAAAAAGAAGAAGAAGGATAAGGATGCTGATGAAGCAGAGGCTGGTTCACCAGATGCGGAGAAGTCTGAGAAGAAGAAAAAGAAACACAAAGAAAAGACAGAAGAAGCTTCTCCTGATGTGGAGAAGTCAGAGAAGAAGAAAAAGAAGGAAAAAGAAGCCAAAAAGAATGCTGCTGAGGTCAATGGGAAGGCTGATGACGATGAGGATAAAAGTGAGAAAAAGAAGAAGAAGCATAAGAAGAAAAGTGAAGATGCAGAGGAATAA 1746 0.4507 MTELEASRSDKKKKKHRSKDETADVQDSDFLIKPQSYTPTIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLPEYIKYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVGKVLRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVSMHDVLDAQWVYDNYRDEGYLRRVVMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRAAMKKKLIAEGKLDKRGKPNENTPQEWLRNVVLPTGGDSIIAGMYASAKPDAKVESKEDGQERKRKHVGSDDAASVPSKKTKTEEVEEAEREEVVKIKKVKEDVVEVEVDKKEKKKKKKKDKDADEAEAGSPDAEKSEKKKKKHKEKTEEASPDVEKSEKKKKKEKEAKKNAAEVNGKADDDEDKSEKKKKKHKKKSEDAEE 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00733 581 MobiDBLite consensus disorder prediction 427 581 - -
Accr5g00733 581 MobiDBLite consensus disorder prediction 430 581 - -
Accr5g00733 581 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 7 557 IPR004802 GO:0006396
Accr5g00733 581 Gene3D PUA domain 43 374 IPR036974 GO:0003723
Accr5g00733 581 Pfam TruB family pseudouridylate synthase (N terminal domain) 104 220 IPR002501 GO:0006396
Accr5g00733 581 SUPERFAMILY Pseudouridine synthase 43 288 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Accr5g00733 581 SMART DKCLD_2 42 100 IPR012960 -
Accr5g00733 581 MobiDBLite consensus disorder prediction 1 27 - -
Accr5g00733 581 Coils Coil 534 555 - -
Accr5g00733 581 Pfam DKCLD (NUC011) domain 43 100 IPR012960 -
Accr5g00733 581 Pfam PUA domain 291 363 IPR002478 GO:0003723
Accr5g00733 581 Gene3D Pseudouridine synthase 76 282 - -
Accr5g00733 581 CDD PseudoU_synth_hDyskerin 82 264 - -
Accr5g00733 581 ProSiteProfiles PUA domain profile. 290 365 - -
Accr5g00733 581 SUPERFAMILY PUA domain-like 290 371 IPR015947 -
Accr5g00733 581 CDD PUA_Cbf5 289 363 - -
Accr5g00733 581 Coils Coil 476 496 - -
Accr5g00733 581 Pfam tRNA pseudouridylate synthase B C-terminal domain 221 287 IPR032819 -
Accr5g00733 581 SMART pua_5 291 365 IPR002478 GO:0003723
Accr5g00733 581 NCBIfam uncharacterized domain 2 287 362 IPR004521 GO:0003723
Accr5g00733 581 FunFam H/ACA ribonucleoprotein complex subunit CBF5 76 282 - -
Accr5g00733 581 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 50 375 IPR004802 GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00733 1 462 NAC Transcription Factor Family AT3G57150 80.687 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00733 K11131 - vvi:100258019 782.711