Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00685 ATGGCCACAGTCACCACCACTGCTCCACCGTCAGCTCCGCCTCCACAGGCCCTAAAATTAGAATCCCTTCCTCGCATAGTCACAACCACACTCTCCCAGTCCGAGCTCCAAGCGCTCTCTCTCTGCTCACTCTCCGCCTTCGACCTCACCTCCACCACCAACCTCGTTTTCCCCCATGTCGACCGTTCACTCTTCAATGAGAGCGCTGGTTCTCGCCGCCAGACCTACTCCCGACCACGCAAACCACTTTCCCCTTCTGACTCCCCCACCGGCCACCGCCGCCGCGTCGCCGGTCTTCTCCCAACTCCAAAGCTCCCTCCTGTCCCCGATGACGACCCGGAAAACTTAGAAAATCGCAAGATTATAGATTATTTGAAGCAATTGATTAGGGAAGACCCTAAATTCGATCAAGTTGAGCTAGCCCCACCTTCTGTTAGCCACGAAGTTGTGCCAAATTTTGAATTAAGGGATGGGATGGAGGAGAGCGAGGATATGGGGCTGGTGAGGAAGAGGAAGAGGGGGAGGAAACCCAAAGTGAAGGCGCATTTGAAGGAGTGTTATAGAGAGATGGATTTTGTGAATAAGGGCGGTGTTGCGTTTGATCTTTCTGCTTTAGCGAATACGGAGGATCCATTTTCTGATGAGTTGAGGAGAAGGACTGAGGGGTTGCAGAGTGAAGAAGAGCTATTGGGGTTTTTGAGGGATTTGGGAGGACAATGGGGAAGTAGGAGGAAGAAGAGGAAGATTGTGGATGCAGGAGATTTCGGCGATGTACTTCCGGTTGGTTGGAAGCTTCTACTGGGTTTGAAGAGAAAAGATGGTCGCGCTTGGATTTATTGCCGCAGATACATAAGTCCTAGTGGAGAACAATTTGTATCTTGCAAAGAAGTTTCTTCATATCTTCAGTCCCTTTTTAGTCACAATGATGCCCAGTTGCCAATCACTCGTGGGGTTGAAAATATGCTGACGGACAATAGGGGGACTACTCAAAGTTTTGCAGGTGTTACCCCTGAGGAGCAGGATAGACGGATGATCATTGCAAATGACTCAGCTCCACCCAGTTCTTCTGAATGTAATGATCGATCAAAGGATGTGGCCTTACTGGGAATTGAGAATCTTGCAGATGTTCAAATACAGGACCTTTTTGAATGTCACAAATGTAGCATGACATTTTATGAGAAGGATTCATACTTGCAGCACCTTTTGTCCTTCCACCAAAGGACAACAAGGCGATATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATCAAAGATGGAAAATTTGAGTGCCAGTTCTGTCATAAGGTGTTTCTTGAACGGCGTCGCTACAATGGACATGTGGGGATCCATGTTAGGAACTATGTGAAGAAAGTTGAAGAATCACCAAGTCAGGTAAATGTTCAAAGGAAAGATAAGTCTCTGATCAGGGAGGATTTGCCTTCAAGGATCTCTAAGATGGATGCGCTAATTGAAATCGCTCAGAACTCTATTATGGAGAATTCTGCAATTGAACCCCTTGGTAATCGTACTACGTCTCCTGATAAACTGAATGTAATTTCTACTACTGAAATTGCTGTTGGTAACTTGGATCATGACAACATTATTGAGTCTCCTCTCAGTGATCTGCAAATGGAAGATAGCATCAGCTACAAAAATGTCAATCACGATTTGAATCACCAAGGTAGTCAACTTGCAGTCATGGATGAAGAAGTTGAGAAAACTGATGGCGGAAAAAAAACTATGGATTCTAAGATAGAGACCTGTGAGGATCCCATTTGTTTGTCAACTGTGAACGACCAAAATGCTGATGCATTTGAGAATTCAGAGATAAAAGATGATGTGGTAATGGCTTTTGATGGTTTGGATCAGTCCAGTGTTGATATGGAAGGAGTTTCACGAAGCCCTTTACTTACTTTATCTGGCAATGATATGACCCCTGAAGTTGAAAATAATCAAAGTTCTGGTGGCACTGTTACTGTAGAGCAACTTAACCATGAGGGAGATAGTAGAATTAGGAATGAGTTCAAAGTTGAATTAGATGGCACAAAAGATGTATCTGTTATGCCTAAATTCCAAGAGACAAGTTTGCCAACCTCTGAAGAGAATACAGTGTCATCTGAGGTGCCAACCCCATCTATGTCCATGGTACAATCTTTGGATTATTTTTCCCATCTCACTGGACTCTCAGATAAGGGTGAAAAGGAAAACCAATACTGCAGTGTTGACCACAGACATGATGACGTGAGTGGGTCCCAGGAATTGAGGATTGATGAAACAGAAACTACAAAGTGTGATTTTTCAATTGGTCAGCCTTCTCTTCCTCTGTCTCAGGTGCCAACAGTTTTGGCAAACAAGACACTGATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGCTTGTGCTTCCTCAGTTCAGGTTCAATCTCAAGAAGCAGGAAGACATCAGATCACAACATCGTGTGTATGGTGTGGTGTAGAGTTTGATTATGATGCTGTTGATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGCCCGGTTTGTAAGGCCAAAATATCTGGTCAAATCGATGTGCTGGACAGTGGATCACCCTTGAATTCTGGCCATATTTGA 2616 0.445 MATVTTTAPPSAPPPQALKLESLPRIVTTTLSQSELQALSLCSLSAFDLTSTTNLVFPHVDRSLFNESAGSRRQTYSRPRKPLSPSDSPTGHRRRVAGLLPTPKLPPVPDDDPENLENRKIIDYLKQLIREDPKFDQVELAPPSVSHEVVPNFELRDGMEESEDMGLVRKRKRGRKPKVKAHLKECYREMDFVNKGGVAFDLSALANTEDPFSDELRRRTEGLQSEEELLGFLRDLGGQWGSRRKKRKIVDAGDFGDVLPVGWKLLLGLKRKDGRAWIYCRRYISPSGEQFVSCKEVSSYLQSLFSHNDAQLPITRGVENMLTDNRGTTQSFAGVTPEEQDRRMIIANDSAPPSSSECNDRSKDVALLGIENLADVQIQDLFECHKCSMTFYEKDSYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVKKVEESPSQVNVQRKDKSLIREDLPSRISKMDALIEIAQNSIMENSAIEPLGNRTTSPDKLNVISTTEIAVGNLDHDNIIESPLSDLQMEDSISYKNVNHDLNHQGSQLAVMDEEVEKTDGGKKTMDSKIETCEDPICLSTVNDQNADAFENSEIKDDVVMAFDGLDQSSVDMEGVSRSPLLTLSGNDMTPEVENNQSSGGTVTVEQLNHEGDSRIRNEFKVELDGTKDVSVMPKFQETSLPTSEENTVSSEVPTPSMSMVQSLDYFSHLTGLSDKGEKENQYCSVDHRHDDVSGSQELRIDETETTKCDFSIGQPSLPLSQVPTVLANKTLMEEEEEEEEEGACASSVQVQSQEAGRHQITTSCVWCGVEFDYDAVDSEIQPDSVGFMCPVCKAKISGQIDVLDSGSPLNSGHI 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00685 871 SMART c2h2final6 429 451 IPR013087 -
Accr5g00685 871 SMART c2h2final6 382 405 IPR013087 -
Accr5g00685 871 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 630 IPR037472 -
Accr5g00685 871 ProSitePatterns Zinc finger C2H2 type domain signature. 384 405 IPR013087 -
Accr5g00685 871 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 249 321 IPR001739 GO:0003677
Accr5g00685 871 ProSiteProfiles Zinc finger C2H2 type domain profile. 429 456 IPR013087 -
Accr5g00685 871 Gene3D Classic Zinc Finger 371 454 - -
Accr5g00685 871 MobiDBLite consensus disorder prediction 68 84 - -
Accr5g00685 871 ProSitePatterns Zinc finger C2H2 type domain signature. 431 451 IPR013087 -
Accr5g00685 871 MobiDBLite consensus disorder prediction 68 115 - -
Accr5g00685 871 ProSiteProfiles Zinc finger C2H2 type domain profile. 382 410 IPR013087 -
Accr5g00685 871 SUPERFAMILY DNA-binding domain 257 307 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00685 Accr-Chr5 30287415 30291264 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g00685 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00685 - - qsa:O6P43_012364 951.429