Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00674 ATGTCTCACTTTGGAAGGTCGGGTCCTCCAGATATCACTGACACCTATTCGCTTCTTGTGCTCAACATCACATTCCGTACAACTGCTGATGACCTGTTTCCCCTGTTCGATAAGTACGGCAAGGTCGTCGACATCTTTATTCCCAGAGATCGAAGGACTGGTGAATCAAGGGGTTTTGCATTTGTGCGGTATAAGTATGCTGATGAGGCACAAAAGGCTGTGGATAGGCTGGACGGAAGAGTGGTTGATGGCCGTGAGATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAGGATTCACAAAGGACGGATTATTGAAACATCCCCCAAGCCTAAGTACAGGTCCAGGAGCCGCAGCCCCAGGAGAAGGTATCGTGATTATTACAGGGACAGGGATTATAGGAGGAGGAGTCGCAGCAGGAGTTATGATAGGTATGAAAGGGATAGGCATCGTGGAAGAGACAGAGATTATCGCCGCAGAAGTAGGAGCCGTAGTGCAAGTCCTGATTACTATAAGAGTCGTGGAAAGGATCGCTATGATGATGATCATCTGAGCAGAAGCCGAAGCCGATCTGTGGATAGTCGCTCCCCTGTACGACGCAGTCTTAGTCCTCGAAGGAGTCCTTCACCTCAAAGGAGTGCTTCCCCTCAAAGAAGTATTTCGCCGAGGAGGAGCCCAAGGGGTGAAAGCCCTGAGAGCCGTAGTCGTGATGGACGATCACCTACACCTCGTAGTGTTTCACCACGTGGTCAACCCAAGGATTCAAGAAGCCCATCCCCTCAAAATTCTAATGGAGATGAATGA 810 0.4938 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERIHKGRIIETSPKPKYRSRSRSPRRRYRDYYRDRDYRRRSRSRSYDRYERDRHRGRDRDYRRRSRSRSASPDYYKSRGKDRYDDDHLSRSRSRSVDSRSPVRRSLSPRRSPSPQRSASPQRSISPRRSPRGESPESRSRDGRSPTPRSVSPRGQPKDSRSPSPQNSNGDE 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00674 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Accr5g00674 269 MobiDBLite consensus disorder prediction 102 269 - -
Accr5g00674 269 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Accr5g00674 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Accr5g00674 269 MobiDBLite consensus disorder prediction 125 197 - -
Accr5g00674 269 SMART rrm1_1 17 90 IPR000504 GO:0003723
Accr5g00674 269 MobiDBLite consensus disorder prediction 242 269 - -
Accr5g00674 269 Gene3D - 4 103 IPR012677 -
Accr5g00674 269 SMART rrm2_1 17 90 IPR003954 GO:0003676
Accr5g00674 269 MobiDBLite consensus disorder prediction 198 226 - -
Accr5g00674 269 CDD RRM_SRSF2_SRSF8 18 90 - -
Accr5g00674 269 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Accr5g00674 269 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 252 - -
Accr5g00674 269 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00674 Accr-Chr5 30087703 30091175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00674 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 8.78e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00674 K12891 - gmx:100778928 286.574