Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00639 ATGTCGGAAGTGGATGAGTATCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGCTGAGGGATACGTTTGAAAAGTTTGGCAAACTCGTTGAGGCAAAGGTGGTGGTTGACAAATTCTCTGGCCGCTCTCGTGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATGGATTTAGATGGTCGAACTATCACTGTTGATAAAGCTCAGCCTCAACAAGGATCTACTAGAGATGACGGTGATCGTTACCGTGACAGGGGTCGTGATCGTAACCGAGATTATGGAGGTGGTCGAAGCTCCAATGGTGGTGAATGTTTTAAATGTGGTAAACCTGGTCATTTTGCCAGGGAATGCCCTAGTGAAGGAGCAGGTGGGGGAAAGTACAGTGGCAGGGAAAGTAGATATGGTGGCAGGAGTGGCGGTAGTGGTCACTATGGTCCTGATAGGAATGCAGATCGCTATTCTGGTGGGCGTAACAGGGACTCAGGTAGTCGTGGAGATTCTGGAAGTGACCGGTACCCTCGTGACCGTGCTGGACCTTATGAGCGTCGAGGATCAGGAGGCTCTCGTTCTGGATAG 621 0.4831 MSEVDEYRCFIGGLAWSTSDRKLRDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEAMNGMDLDGRTITVDKAQPQQGSTRDDGDRYRDRGRDRNRDYGGGRSSNGGECFKCGKPGHFARECPSEGAGGGKYSGRESRYGGRSGGSGHYGPDRNADRYSGGRNRDSGSRGDSGSDRYPRDRAGPYERRGSGGSRSG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00639 206 Gene3D - 2 114 IPR012677 -
Accr5g00639 206 CDD RRM2_NsCP33_like 8 83 - -
Accr5g00639 206 SUPERFAMILY Retrovirus zinc finger-like domains 111 136 IPR036875 GO:0003676|GO:0008270
Accr5g00639 206 SMART rrm1_1 8 81 IPR000504 GO:0003723
Accr5g00639 206 Gene3D - 115 180 - -
Accr5g00639 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Accr5g00639 206 Pfam Zinc knuckle 118 134 IPR001878 GO:0003676|GO:0008270
Accr5g00639 206 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Accr5g00639 206 MobiDBLite consensus disorder prediction 77 119 - -
Accr5g00639 206 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 202 - -
Accr5g00639 206 MobiDBLite consensus disorder prediction 88 109 - -
Accr5g00639 206 FunFam Glycine-rich RNA-binding protein RZ1A 1 118 - -
Accr5g00639 206 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Accr5g00639 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Accr5g00639 206 MobiDBLite consensus disorder prediction 165 197 - -
Accr5g00639 206 ProSiteProfiles Zinc finger CCHC-type profile. 119 134 IPR001878 GO:0003676|GO:0008270
Accr5g00639 206 MobiDBLite consensus disorder prediction 134 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00639 Accr-Chr5 29135125 29135994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00639 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 36.842 3.83e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00639 - - gmx:100815224 250.366