Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00624 ATGGCTGATGAAGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCAAGGGCTGTGTTCCCTAGCATTGTTGGGCGACCTCGCCATACAGGTGTTATGGTTGGGATGGGTCAGAAGGATGCTTATGTGGGTGATGAAGCGCAGTCAAAAAGAGGTATCCTGACCTTGAAGTACCCCATAGAGCATGGCATAGTAAGCAATTGGGATGATATGGAGAAGATTTGGCATCACACTTTCTACAATGAACTTCGTGTTTCCCCTGAGGAACACCCAGTACTTCTTACTGAGGCGCCACTTAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATCATGTTTGAAACTTTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCTGTTCTGTCTCTGTATGCTAGTGGCCGTACAACAGGTATTGTCCTGGATTCTGGTGATGGTGTGAGCCATACAGTGCCCATTTATGAAGGGTATGCTCTCCCTCATGCAATCCTACGGCTGGACCTCGCTGGACGTGACTTGACAGATCACCTGATGAAAATTCTTACTGAGAGAGGATACACTTTCACTACCTCTGCTGAACGGGAAATTGTACGTGATATGAAAGAGAAACTAGCATATGTGGCCCTTGATTATGAGCAAGAATTGGAAACTTGCAAGAGTAGTTCAGCAGTGGAGAAGAGCTACGAGTTGCCTGATGGACAGGTTATCACAATCGGCGCTGAGAGATTCAGATGCCCAGAAGTACTTTTCCAGCCATCTTTTGTTGGTATGGAAGCTGCTGGAATTCATGAAACAACCTACAACTCTATCATGAAATGTGATGTTGATATTAGGAAGGATCTATATGGAAATATTGTCCTCAGTGGTGGCTCAACCATGTTCCCTGGCATTGCTGATCGTATGAGCAAGGAAATTACCGCTCTCGCTCTGTTAGGAAATCAGTGTATATTAGGAAAGTATCTTAGGAAATCAGGGATATGTTAG 1023 0.4526 MADEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVSPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYTFTTSAEREIVRDMKEKLAYVALDYEQELETCKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALALLGNQCILGKYLRKSGIC 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00624 340 PRINTS Actin signature 237 253 IPR004000 -
Accr5g00624 340 PRINTS Actin signature 50 61 IPR004000 -
Accr5g00624 340 PRINTS Actin signature 141 160 IPR004000 -
Accr5g00624 340 PRINTS Actin signature 116 129 IPR004000 -
Accr5g00624 340 PRINTS Actin signature 27 36 IPR004000 -
Accr5g00624 340 PRINTS Actin signature 62 84 IPR004000 -
Accr5g00624 340 FunFam actin, alpha sarcomeric/skeletal-like 273 328 - -
Accr5g00624 340 FunFam Actin, muscle 181 272 - -
Accr5g00624 340 SMART actin_3 6 334 IPR004000 -
Accr5g00624 340 Pfam Actin 5 322 IPR004000 -
Accr5g00624 340 SUPERFAMILY Actin-like ATPase domain 148 324 IPR043129 -
Accr5g00624 340 SUPERFAMILY Actin-like ATPase domain 5 154 IPR043129 -
Accr5g00624 340 ProSitePatterns Actins and actin-related proteins signature. 105 117 IPR020902 -
Accr5g00624 340 FunFam Actin, alpha skeletal muscle 2 173 - -
Accr5g00624 340 CDD NBD_sugar-kinase_HSP70_actin 9 182 - -
Accr5g00624 340 ProSitePatterns Actins signature 1. 54 64 IPR004001 -
Accr5g00624 340 Gene3D Actin; Chain A, domain 4 181 272 - -
Accr5g00624 340 Gene3D - 9 138 - -
Accr5g00624 340 Gene3D - 139 322 - -
Accr5g00624 340 PANTHER ACTIN 8 322 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00624 Accr-Chr5 28750874 28752262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00624 1 322 Cytoskeleton Gene Families AT5G09810 95.975 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00624 K10355 - tcc:18607391 631.713