Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00593 ATGATGACATCCTCCCATCATCATTTTGACTATAAGAGGAAAGTTTGCCACAATGACCGCTCTTCGGCCAGTATCGGCACCACTAGGAGCCTACGAATCTGCACAAATTTCAAATGCAGGACAAGGAACACTCCCATGTGGCGTAGGGGGCCTCTAGGTCCAAAGACCCTCTGCAATGCATGTGGAATTCAGTATAAGAAGCAAGTGTCGAGCAATGCATGTGGAATTCAGTATAAGAAGCAAGTGTCCAGCAGAGGAAGCGACTAG 267 0.4757 MMTSSHHHFDYKRKVCHNDRSSASIGTTRSLRICTNFKCRTRNTPMWRRGPLGPKTLCNACGIQYKKQVSSNACGIQYKKQVSSRGSD 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00593 88 Pfam GATA zinc finger 38 68 IPR000679 GO:0006355|GO:0043565
Accr5g00593 88 Gene3D - 28 71 IPR013088 GO:0006355|GO:0008270
Accr5g00593 88 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 30 68 - -
Accr5g00593 88 ProSiteProfiles GATA-type zinc finger domain profile. 39 85 IPR000679 GO:0006355|GO:0043565
Accr5g00593 88 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 16 68 - -
Accr5g00593 88 SMART GATA_3 30 83 IPR000679 GO:0006355|GO:0043565
Accr5g00593 88 CDD ZnF_GATA 33 67 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00593 Accr-Chr5 28026583 28027426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00593 31 68 C2C2-Gata Transcription Factor Family AT3G20750 65.789 1.26e-15 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr5g00593 GATA 1.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00593 - - gmx:102663335 80.1073