Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00592 ATGGTGACATCCTCCCATCATCATTTTGACTCTAAGAGGAAAGTTTGCCACAATGATCGCTCTTTGGCCAGTATCGACACCGCGAGGAGTTTACGCCCTCGGCGGCCGTCATCACCAAACTGTGACCTACGAATCTGCACAAATTACAAATGCAGGACTAGGAACACTCCCATGTGGCGTAGGGGACCTCTAGGTCCAAAGACTCTTTGCAATGCATGTGGAATTCAGTATAAGAAGCAAGTGTCAAGCAGAGGAAGCGACCTGTTGTGA 270 0.4889 MVTSSHHHFDSKRKVCHNDRSLASIDTARSLRPRRPSSPNCDLRICTNYKCRTRNTPMWRRGPLGPKTLCNACGIQYKKQVSSRGSDLL 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00592 89 CDD ZnF_GATA 45 88 IPR000679 GO:0006355|GO:0043565
Accr5g00592 89 Pfam GATA zinc finger 50 80 IPR000679 GO:0006355|GO:0043565
Accr5g00592 89 Gene3D - 42 87 IPR013088 GO:0006355|GO:0008270
Accr5g00592 89 PANTHER OS01G0976800 PROTEIN 30 81 - -
Accr5g00592 89 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 44 84 - -
Accr5g00592 89 ProSiteProfiles GATA-type zinc finger domain profile. 51 84 IPR000679 GO:0006355|GO:0043565
Accr5g00592 89 SMART GATA_3 40 88 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00592 Accr-Chr5 27976701 27977573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00592 43 80 C2C2-Gata Transcription Factor Family AT3G20750 65.789 2.87e-15 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr5g00592 GATA 2.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00592 - - rcu:8267540 79.3369