LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g00572	ATGGCCATCGTGCCGGAGAAGACAGCTTCCGATGCCCGATCTGACCCCAACTCCACTCCTGGTAAGAGAAAATTGAGATCTGATGGGCCGCTGATTATGGACAGTCCAATCTCTTCACCCACCAAATGGAAATCGCCTCGACAATGTAGCAGTGAGAACAAGGATGGCGCTGTCGCCGCAAAAGAGATGGTTGCTAATGAAGGTGAAATCAAATCGCATAAATCGCCTTCTAAGTCAATGCAGGATAGTTTTGCTGATAAACTGAAATGGAACCCCAAAGATGGTGAGCAAGTAAGGACAGTGAAGGAGGCATTGCATGTGTCTACAGCACCATCTACAATTGTCTGCCGTGAAGACGAGCAGAATATGGTTTTTGAGTTCTGCAAGTCATGCGTTGAACATAAGAAGGCTGGGAGTATATACATATGTGGGTGTCCTGGTACTGGAAAATCGCTATCCATGGAGAAAGTAAAAAAGCTTTTAGTCGATTGGGCTAAACAGGCAGGCTTTCTTCAGCTTGATGTCTTATCTGTGAACTGTACATCTCTTGCAAATACATCTGACATTTTCAGCAAGATGCTTGGATTAAACCAACCACAGGGAAAAAAGACTGAAGCTTCTTCCTTACAACAGCTTCAGAGCTTATACTCTCAGAAGTCGTCAGGCCAGAAGATGATATTGATGGTGGTTGATGAATTAGATTATCTGATCACCAAAGATAGGGCTGTGCTTCACGATCTCTTCACTCTCACCACTTTCCCATTTTCTAGATGTATATTAATAGGGATATCAAATGCAATTGACCTTGCTGATCGTTTTCTTCCGAGGTTGAAATCATTGAACTGCAAGCCTATAATTGTTACATTTCGGGCATACTCTAAAGACCAGATCCTTAGCATCCTGAAAGAAAGGCTAAGGGAACTTCCTTACACTGTGTTCCAACATCAAGCACTAGAGCTCTGTGCTCGGAAAGTTGCTGCTTCTTCTGGAGACATGCGAAAGGCTCTTTGTATTTGCAGGAGTGCAATTGAGATGCTAGAGGCAGAAATTAGAGAATCTATTGGCCTTTCAGAAATTTCATTAGAAGAGAAAGCTTCCCCTCGACAAAATATAGCTTCTGACCCCAATCATGTAAAACAGGAATTTGATGCTGTAAGGATTGATCATGTGGCTCTTGCCTTGTCCAAAACATATAGATCTCCTTTGGTGGATACAATACAATCTCTACCACATCATCAACAGATTATCCTTTGCTCTTCGATGAAACAGTTCCGTGGAGCAAAGAAAGATACAATCCTTGGCGAGTTGTACAAATCTTACACGGGCATATGCAAATCATCACTGATTCCTCCGGCTGGAATTTTGGAATTTTCAAACATGTGCAGAGTGTTGAATGATCAGGGGCTTATTAAATTAGGACCATCGCGGGAGGACAAATTGAAGAGGGTGACACTAAACATAGATGAAGCTGATGTTACCTTTGCATTGCAGGGAATTCGTTTCTTTAGAAACTGTCTTCAATAA	1524	0.4232	MAIVPEKTASDARSDPNSTPGKRKLRSDGPLIMDSPISSPTKWKSPRQCSSENKDGAVAAKEMVANEGEIKSHKSPSKSMQDSFADKLKWNPKDGEQVRTVKEALHVSTAPSTIVCREDEQNMVFEFCKSCVEHKKAGSIYICGCPGTGKSLSMEKVKKLLVDWAKQAGFLQLDVLSVNCTSLANTSDIFSKMLGLNQPQGKKTEASSLQQLQSLYSQKSSGQKMILMVVDELDYLITKDRAVLHDLFTLTTFPFSRCILIGISNAIDLADRFLPRLKSLNCKPIIVTFRAYSKDQILSILKERLRELPYTVFQHQALELCARKVAASSGDMRKALCICRSAIEMLEAEIRESIGLSEISLEEKASPRQNIASDPNHVKQEFDAVRIDHVALALSKTYRSPLVDTIQSLPHHQQIILCSSMKQFRGAKKDTILGELYKSYTGICKSSLIPPAGILEFSNMCRVLNDQGLIKLGPSREDKLKRVTLNIDEADVTFALQGIRFFRNCLQ	507

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g00572	507	Pfam	CDC6, C terminal winged helix domain	417	495	IPR015163	-
	Accr5g00572	507	SUPERFAMILY	"Winged helix" DNA-binding domain	402	505	IPR036390	-
	Accr5g00572	507	FunFam	Cell division control protein	409	499	-	-
	Accr5g00572	507	PANTHER	CELL DIVISION CONTROL PROTEIN 6-RELATED	40	505	-	-
	Accr5g00572	507	Pfam	AAA domain	135	252	IPR003593	GO:0016887
	Accr5g00572	507	SMART	Cdc6_C_2	417	496	IPR015163	-
	Accr5g00572	507	MobiDBLite	consensus disorder prediction	38	52	-	-
	Accr5g00572	507	MobiDBLite	consensus disorder prediction	1	83	-	-
	Accr5g00572	507	FunFam	Cell division control protein	281	406	-	-
	Accr5g00572	507	Gene3D	-	94	281	IPR027417	-
	Accr5g00572	507	Gene3D	-	282	405	-	-
	Accr5g00572	507	FunFam	Cell division control protein	95	280	-	-
	Accr5g00572	507	Pfam	AAA lid domain	313	349	IPR041083	-
	Accr5g00572	507	Gene3D	-	406	496	IPR036388	-
	Accr5g00572	507	CDD	Cdc6_C	410	492	IPR015163	-
	Accr5g00572	507	CDD	AAA	120	281	-	-
	Accr5g00572	507	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	104	357	IPR027417	-
	Accr5g00572	507	PIRSF	Cdc6	4	507	IPR016314	GO:0006270\|GO:0051301

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g00572	Accr-Chr5	27719120	27724535	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g00572	13	506	Core DNA Replication Machinery Family	AT2G29680	59.091	0.0	576

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g00572	K02213		-	qsu:111991906	657.136