Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00529 ATGTCATTCCGGAGTATAGTTCGTGATGTGAGAGACAGCTTAGGGAGCTTATCTAGACGGGGTTTTGATGTGTGGCAGACTGGTCATCACACAGGAAAATCTCATGGTGCTATACATGATCAGCCAGCAGTAATTGAAGATAGTTGCTGGGCTAGCTTGCCGCCAGAATTGTTGTATGATATCATTAGAAGGCTAGAAGAGAGTGAAAGTACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCGGTATGCCGGTCTTGGAGGACTATGTGCAAAGAAATCGTTAAGAGTCCAGAGTTTAGTGGCAAGCTTACTTTCCCTGTGTCCTTGAAGCAGCCAGGGCCGCGAGACGGAGCCATTCAGTGTTTCATTAAAAGGGATAAATCTAACTTATCATATCGCCTTTTCCTTTCTCTCAGCCCTACTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCCGGCAATATCTCTCAATCGAGTAGCTGTTACATTGGAAAGCTGAGATCAAACTTGCTGGGTACCAAATATGTAATATACGACACACAGCCTCCCTACAATTCTGCCCATCTACCACCGCCTCCTGGGAGGACAAGCCGAAGGTTTTATTTGAAAAAGGTATCACCACCAAAGTTTACATCTGGGAGTTACAGCATAGCTCAAGTAACATACGAATTAAATGTTTTTGGGACACGAGGCCCAAGAAAGATGCACTGCATTATGCATTCAATACCGGCATCAGCACTTGATGCTGGTGGCACGGTCCCTGGCCAACCTGAGCTTCTTCCTCGCCCCTTGGGGCACTCATTCCGGAGCAGGTCCTTTTCAAAATCCTTAGATCGCTCTGTTGAGTTCAGCAGCTCCAGATTTTCAGAGTTGAGGGAAGGCAGTAATGAGGAGAAGAGTGAGGACGGCAAGGCAGGGCCCTTGGTTCTGAAAAACAAACCTCCAAGATGGCATGAACAATTGCAGTGTTGGTGCCTTAACTTCCGCGGCCGGGTAACCGTTGCATCGGTTAAAAACTTTCAGTTGATTGCTGCTACCCAGCCAGCCGCAGCCGATGCTCCTGCGCCATCTCAGTCAGCACCGCCGCCTGAGCAAGATAAGATAATCTTGCAGTTTGGTAAAGTTGGGAAAGATATGTTCACCATGGATTACCGATATCCTTTATCGGCCTTCCAGGCTTTTGCGATATGCTTGAGCAGCTTTGACACCAAATTGGCCTGTGAATAA 1287 0.467 MSFRSIVRDVRDSLGSLSRRGFDVWQTGHHTGKSHGAIHDQPAVIEDSCWASLPPELLYDIIRRLEESESTWPARKHVVACAAVCRSWRTMCKEIVKSPEFSGKLTFPVSLKQPGPRDGAIQCFIKRDKSNLSYRLFLSLSPTLLVENGKFLLSAKRTRRTTYTEYVISMDAGNISQSSSCYIGKLRSNLLGTKYVIYDTQPPYNSAHLPPPPGRTSRRFYLKKVSPPKFTSGSYSIAQVTYELNVFGTRGPRKMHCIMHSIPASALDAGGTVPGQPELLPRPLGHSFRSRSFSKSLDRSVEFSSSRFSELREGSNEEKSEDGKAGPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAADAPAPSQSAPPPEQDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00529 428 CDD F-box_AtTLP-like 50 94 - -
Accr5g00529 428 Pfam F-box domain 50 97 IPR001810 GO:0005515
Accr5g00529 428 Gene3D - 45 98 - -
Accr5g00529 428 Pfam Tub family 111 423 IPR000007 -
Accr5g00529 428 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Accr5g00529 428 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Accr5g00529 428 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Accr5g00529 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Accr5g00529 428 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Accr5g00529 428 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Accr5g00529 428 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Accr5g00529 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Accr5g00529 428 FunFam Tubby-like F-box protein 45 98 - -
Accr5g00529 428 PANTHER TUBBY-RELATED 39 426 - -
Accr5g00529 428 SUPERFAMILY Tubby C-terminal domain-like 99 428 IPR025659 -
Accr5g00529 428 MobiDBLite consensus disorder prediction 311 326 - -
Accr5g00529 428 Gene3D Tubby Protein; Chain A 109 422 IPR025659 -
Accr5g00529 428 SUPERFAMILY F-box domain 48 94 IPR036047 GO:0005515
Accr5g00529 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Accr5g00529 428 MobiDBLite consensus disorder prediction 307 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00529 Accr-Chr5 26589655 26591667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00529 1 428 TUB Transcription Factor Family AT1G76900 66.302 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr5g00529 Tub 3e-111 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00529 K19600 - gmx:100814578 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g00529 5 26589655 26591667 Accr5g00529 5 26589655 26591667 ECH