Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00496 ATGGCTTCTAATTCCCAGGATCCGTACAGTCCCATCCACTTCTACAGAGTCATCTCTAAAACCAATCTTGATGTCATTATGATTCCAAGCAAATTTACTGTGAGATATGGAAGATGTTTGTCCAACCCAGTGTGTCTGAAGTCTCCTGATGGTAAAGAATGGAAAGTGTATTGGGAAAAACGTGATAATGATTTTTGGTTTCGAAAGGGATGGAAAGAATTTACTAACTTTTACTCTCTAGATGTTGGTTATCTGGTTCTGTTCAAATATGAAGGAACTTCTCAGCTTGGTGTACACATAATTGACAAGAGTGCCCTAGAAATAGAATATCCTTTTTCTATGCACGCCTCTAGTCAAGAGGACAACCTTGATAATCTCAATGATGATACAGTTGTAATCTTGGACAAGACATCTCCAAGCCCTGAGGACAAGCTTGATAATCTAAGTGATGATATAATCGAAATCTCGGATGAGATGCCTCAAAGCCCTAAGGCTAGTGACAATAAGCCCTCATCATCTTCTAGGCCTCGTAAGAAAATGAGAAGTACTACAGATAAAGATGTTGAAATGAGAAGCTTCAATCTGCAGAATATGCCTGGGTGTATGAAAGCCGAAGACAGGCAACTTCAAGGAACAAAATTGAAGACAGAAAATACGCCCTTTTCATCTTCTAGGCCTCTTAAGAAAATGAGAAGTACTACAGATCAAGATGTTGAAACAAGAAGCTTCAATCCGCAGAATGTGCCGGTGGGCATGAAAACTGAAGACAGGCAATTTCAAGCAACAAAACTTCAGAAATCAGCCAATGCAGACTTGAAATTTTCTCAGCAGAAATCTGAAGGAGACACCGGAAAAAGAATTTTTGAAAAGAGTAAATATATGAATTTTGAGAATGGAATGAAGAAAGTATTAACTGCTGTGAAAAAGGACATTGCTTTGGAGAGTGCCAGTTCCTTGGATACTGATAAGCCCCATTTCACTATGGTCATGCAACCTTCATACGTCAGTCCTAACCCTTATTTGCCAATTCCAAAAGAATTTGCAAAAAAAAATTTGGGGGAAGATTGTGAAGTTGTCAAACTTCAGGCCTTGGATGGGAGAATTTGGCATGCTACGTATAGGTCTCACAAAATTGGAAAAGGCTGGAAGAATTTTGTGAACGAAAGTGGGTTGAAGGAGGGACATGTCTGTGCATTTGAAATGATTGGTCCCTCATTATTCAAAGTACATATTTTAAGAGGGGCTGAAAAAGGAAATCTGAAAGTTAACTCTGTTGAAGGAAAAAAGAAAGTTAACTCTTTTGAGAAGAAGCCGAGCAGTAGGATGCAAGATCCACCTCTTGAAAAGGCTAGCTCTTCCAAATCTGAAAATCGTCATTTTACAGTAATGATGACTCACGCTCACATTCATGGCACATCATACCTGCACGTGCCAATTGAATATGCAAAAGCACATCTTCGTAATATTACTACTAAGAGTGTCACACTTATTGTACAAGATAAAGATTGGACTGTTGGGTACGCATTCAGAAGTTATAATAAACAACGACAAAGTGCGGAATTTTCTTGGGGGTGGAAACAATTCTGTAAGGATAATGACTTGAAAGTAGGGGATGTTTGTGAGTTTGAGCTCACTAAGAAATTCAGATTTCAAGTGACAATTTATCGGGTTGCCTCCAAAAACCCGGTTCACTCAAGCAACTAG 1704 0.3891 MASNSQDPYSPIHFYRVISKTNLDVIMIPSKFTVRYGRCLSNPVCLKSPDGKEWKVYWEKRDNDFWFRKGWKEFTNFYSLDVGYLVLFKYEGTSQLGVHIIDKSALEIEYPFSMHASSQEDNLDNLNDDTVVILDKTSPSPEDKLDNLSDDIIEISDEMPQSPKASDNKPSSSSRPRKKMRSTTDKDVEMRSFNLQNMPGCMKAEDRQLQGTKLKTENTPFSSSRPLKKMRSTTDQDVETRSFNPQNVPVGMKTEDRQFQATKLQKSANADLKFSQQKSEGDTGKRIFEKSKYMNFENGMKKVLTAVKKDIALESASSLDTDKPHFTMVMQPSYVSPNPYLPIPKEFAKKNLGEDCEVVKLQALDGRIWHATYRSHKIGKGWKNFVNESGLKEGHVCAFEMIGPSLFKVHILRGAEKGNLKVNSVEGKKKVNSFEKKPSSRMQDPPLEKASSSKSENRHFTVMMTHAHIHGTSYLHVPIEYAKAHLRNITTKSVTLIVQDKDWTVGYAFRSYNKQRQSAEFSWGWKQFCKDNDLKVGDVCEFELTKKFRFQVTIYRVASKNPVHSSN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00496 567 MobiDBLite consensus disorder prediction 171 188 - -
Accr5g00496 567 Gene3D - 8 105 IPR015300 -
Accr5g00496 567 CDD B3_DNA 458 556 IPR003340 GO:0003677
Accr5g00496 567 CDD B3_DNA 13 102 IPR003340 GO:0003677
Accr5g00496 567 Gene3D - 440 559 IPR015300 -
Accr5g00496 567 Gene3D - 303 416 IPR015300 -
Accr5g00496 567 ProSiteProfiles B3 DNA-binding domain profile. 460 558 IPR003340 GO:0003677
Accr5g00496 567 SUPERFAMILY DNA-binding pseudobarrel domain 10 104 IPR015300 -
Accr5g00496 567 MobiDBLite consensus disorder prediction 263 285 - -
Accr5g00496 567 ProSiteProfiles B3 DNA-binding domain profile. 326 415 IPR003340 GO:0003677
Accr5g00496 567 SUPERFAMILY DNA-binding pseudobarrel domain 455 557 IPR015300 -
Accr5g00496 567 CDD B3_DNA 324 413 IPR003340 GO:0003677
Accr5g00496 567 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 431 565 IPR044837 -
Accr5g00496 567 SMART B3_2 14 104 IPR003340 GO:0003677
Accr5g00496 567 SMART B3_2 326 415 IPR003340 GO:0003677
Accr5g00496 567 SMART B3_2 460 558 IPR003340 GO:0003677
Accr5g00496 567 MobiDBLite consensus disorder prediction 216 250 - -
Accr5g00496 567 MobiDBLite consensus disorder prediction 431 455 - -
Accr5g00496 567 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Accr5g00496 567 Pfam B3 DNA binding domain 21 103 IPR003340 GO:0003677
Accr5g00496 567 Pfam B3 DNA binding domain 460 556 IPR003340 GO:0003677
Accr5g00496 567 Pfam B3 DNA binding domain 326 413 IPR003340 GO:0003677
Accr5g00496 567 MobiDBLite consensus disorder prediction 157 189 - -
Accr5g00496 567 MobiDBLite consensus disorder prediction 263 277 - -
Accr5g00496 567 SUPERFAMILY DNA-binding pseudobarrel domain 319 413 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00496 Accr-Chr5 25379983 25384195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00496 447 557 B3 DNA Binding Superfamily AT3G18990 28.319 6.64e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr5g00496 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00496 - - pcin:129304822 420.624