Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00495 ATGGCTTCTCATTTTCATCCTCCTGGCCCTATCAATTTCTTCAAAATCATCTTGAAATCCAATCTTGAATCCATTAAGATTCCAAACAAATTTACAAGGAGATATGGAAGTGGTTTGTCAAACCCTGTGTTACTGAAGCCTCCGGATGGGAAAGAGTGGAAAGTACATCTGAAAACACATGATAATGAGGTTTGGTTTCAAGAGGGTTGGAATGAATTTGCTCGCTTTTACTCTCTAGATGAAGGACATTTGATTTTGTTCAAGTATGAAGGAACTTCTTGGTTTGATGTACACTTATTTGATATGAGTGCACTGGAAATAGACTATCCTTCTTCATCTAATGAGAATAATGTCAGAGATGATACAGTTGAAATCTCGGACGAGATGCCTTCAAACCGAAAGGCTAGGAACAAAACACTTTTGCCATCCTTTAGGCCTGATAAGAAAATGAGAATTCTACCAAAGTCGCATGTGGTTTCGGAAACAAATCATGGTCAATATCAAGGAACAGAGTTTCAGAAATCAACCAATGCAGTAGAATTGAAATTTCCTAAGAAGGAACCAGAAGAAGATACAGGAGTGAGAATATCTAGTGCATGCTTGAATTCTGAGCATAGAAGGAAGAGAGCATTAACTACTATGGAAAAGATCAGAGCTATTAACAGTTCCAGTTCTTTCAAATCCAAATATCCGTTTTTCATGGTAATCATGCAGCCTTCATATGTCAGGCATAAATGTCACTTGGTGATGCCAACAAAATTTGCTAAAACACATTTGGAGAAAGAGCGTGGTGTTGTGCAACTTGAGGCACGAGATGGGAGAACTTGGACTGTCAAGTATAAGATTCCCACAATCAAAGATGGGTGGGAGAAGTTTGTAATGGAAAATGGTTTGAAAGTGGGTCAAGTTTGTATTTTTGAAATGATTGGTAGGGTGTTCAAAGTACATATTTTCGGAGACCAGGAAGAAGTTAAAAGCAGACAGAGGATTTACAATCTTGCAGAAGATCTGAAAGTTAAAAAGGAGCAGATCAGCAGTATGCAACATACTCCTTTTGAGAAGGCCATCTCTTTCAAATCTGAGTATCCTCATTTTATGGTTAAGATGACAAATGCTTACATTTGTGGCAAGTCAAACTTGTGGTGTAAGGTCTTGCTAGATCGCTTTGGATCTCAAGCTCAAGTCCTAGAGAGACACTTGTGTTGGGAGGAACAGTCATGA 1221 0.3849 MASHFHPPGPINFFKIILKSNLESIKIPNKFTRRYGSGLSNPVLLKPPDGKEWKVHLKTHDNEVWFQEGWNEFARFYSLDEGHLILFKYEGTSWFDVHLFDMSALEIDYPSSSNENNVRDDTVEISDEMPSNRKARNKTLLPSFRPDKKMRILPKSHVVSETNHGQYQGTEFQKSTNAVELKFPKKEPEEDTGVRISSACLNSEHRRKRALTTMEKIRAINSSSSFKSKYPFFMVIMQPSYVRHKCHLVMPTKFAKTHLEKERGVVQLEARDGRTWTVKYKIPTIKDGWEKFVMENGLKVGQVCIFEMIGRVFKVHIFGDQEEVKSRQRIYNLAEDLKVKKEQISSMQHTPFEKAISFKSEYPHFMVKMTNAYICGKSNLWCKVLLDRFGSQAQVLERHLCWEEQS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00495 406 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Accr5g00495 406 CDD B3_DNA 13 101 IPR003340 GO:0003677
Accr5g00495 406 Pfam B3 DNA binding domain 233 318 IPR003340 GO:0003677
Accr5g00495 406 Pfam B3 DNA binding domain 13 101 IPR003340 GO:0003677
Accr5g00495 406 SUPERFAMILY DNA-binding pseudobarrel domain 8 110 IPR015300 -
Accr5g00495 406 PANTHER B3 DOMAIN-CONTAINING 223 353 - -
Accr5g00495 406 ProSiteProfiles B3 DNA-binding domain profile. 233 321 IPR003340 GO:0003677
Accr5g00495 406 Gene3D - 210 322 IPR015300 -
Accr5g00495 406 SUPERFAMILY DNA-binding pseudobarrel domain 226 319 IPR015300 -
Accr5g00495 406 SMART B3_2 13 103 IPR003340 GO:0003677
Accr5g00495 406 SMART B3_2 233 321 IPR003340 GO:0003677
Accr5g00495 406 Gene3D - 10 104 IPR015300 -
Accr5g00495 406 CDD B3_DNA 231 318 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00495 Accr-Chr5 25366616 25369107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00495 13 336 B3 DNA Binding Superfamily AT3G18990 31.944 1.57e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr5g00495 B3 1.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00495 - - pcin:129304822 511.916