Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00494 ATGGCTTCTCATTTTCATCCTCCTGGCCCTATCAATTTCTTCAAAATCATCTTGAAATCCAATCTTGAATCCATTATTCCAAACAAATTTACAAGGAGATATGGAAGTGGTTTGTCAAACCCTGTGTTACTGAAGCCTCCGGATGGGAAAGAGTGGAAAGTACATCTGAAAACACATGATAATGAGGTTTGGTTTCAAGAGGGTTGGAATGAATTTGCTCGCTTTTACTCTCTAGATGAAGGACATTTGATTTTGTTCAAGTATGAAGGAACTTCTTGGTTTGATGTACACTTATTTGATATGAGTGCACTGGAAATAGACTATCCTTCTTCATCTAATGAGAATAATGTCAGAGATGATACAGTTGAAATCTCGGACGAGATGCCTTCAAACCGAAAGGCTAGGAACAAAACACTTTTGCCATCCTTTAGGCCTGATAAGAAAATGAGAATTCTACCAAAGTCGCATGTGGTTTCGGAAACAAATCATGGTCAATATCAAGGAACAGAGTTTCAGAAATCAACCAATGCAGTAGAATTGAAATTTCCTAAGAAGGAACCAGAAGAAGATACAGGAGTGAGAATATCTAGTGCATGCTTGAATTCTGAGCATAGAAGGAAGAGAGCATTAACTACTATGGAAAAGATCAGAGCTATTAACAGTTCCAGTTCTTTCAAATCCAAATATCCGTTTTTCATGGTAATCATGCAGCCTTCATATGTCAGGCATAAATGTCACTTGGTGATGCCAACAAAATTTGCTAAAACACATTTGGAGAAAGAGCGTGGTGTTGTGCAACTTGAGGCACGAGATGGGAGAACTTGGACTGTCAAGTATAAGATTCCCACAATCAAAGATGGGTGGGAGAAGTTTGTAATGGAAAATGGTTTGAAAGTGGGTCAAGTTTGTATTTTTGAAATGATTGGTAGGGTGTTCAAAGTACATATTTTCGGAGACCAGGAAGAAGTTAAAAGCAGACAGAGGATTTACAATCTTGCAGAAGATCTGAAAGTTAAAAAGGAGCAGATCAGCAGTATGCAACATACTCCTTTTGAGAAGGCCATCTCTTTCAAATCTGAGTATCCTCATTTTATGGTTAAGATGACAAATGCTTACATTTGTGGCAAGTCAAACTTGCATGTGCCATCACATTTTGCAAGAAAACATCTTCATGACTGTACTGAGAGTATCAAACTTGTTGTACAAGATATAGTTTGGTCTGTTGAGTACGTATTTAGAATGATTACTCGAGGAATTGAAGCTCATGAGTTTTCCTCTGTTGGATGGAGGCGATTTCGCGAGGACAACAACTTGAAAGTAGGTGATATCTGTGTCTTTGAGCTCAACCCCGACATCAAACTTACATTTCAAGTAACAATTTTACGAGCCACTAAAACACCTAGCTCATCCTACAAACTCAGGTCAACCTGA 1431 0.3829 MASHFHPPGPINFFKIILKSNLESIIPNKFTRRYGSGLSNPVLLKPPDGKEWKVHLKTHDNEVWFQEGWNEFARFYSLDEGHLILFKYEGTSWFDVHLFDMSALEIDYPSSSNENNVRDDTVEISDEMPSNRKARNKTLLPSFRPDKKMRILPKSHVVSETNHGQYQGTEFQKSTNAVELKFPKKEPEEDTGVRISSACLNSEHRRKRALTTMEKIRAINSSSSFKSKYPFFMVIMQPSYVRHKCHLVMPTKFAKTHLEKERGVVQLEARDGRTWTVKYKIPTIKDGWEKFVMENGLKVGQVCIFEMIGRVFKVHIFGDQEEVKSRQRIYNLAEDLKVKKEQISSMQHTPFEKAISFKSEYPHFMVKMTNAYICGKSNLHVPSHFARKHLHDCTESIKLVVQDIVWSVEYVFRMITRGIEAHEFSSVGWRRFREDNNLKVGDICVFELNPDIKLTFQVTILRATKTPSSSYKLRST 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00494 476 ProSiteProfiles B3 DNA-binding domain profile. 364 464 IPR003340 GO:0003677
Accr5g00494 476 Gene3D - 209 321 IPR015300 -
Accr5g00494 476 Gene3D - 344 465 IPR015300 -
Accr5g00494 476 CDD B3_DNA 362 462 IPR003340 GO:0003677
Accr5g00494 476 Pfam B3 DNA binding domain 232 317 IPR003340 GO:0003677
Accr5g00494 476 Pfam B3 DNA binding domain 23 100 IPR003340 GO:0003677
Accr5g00494 476 Pfam B3 DNA binding domain 364 463 IPR003340 GO:0003677
Accr5g00494 476 Gene3D - 10 103 IPR015300 -
Accr5g00494 476 ProSiteProfiles B3 DNA-binding domain profile. 232 320 IPR003340 GO:0003677
Accr5g00494 476 ProSiteProfiles B3 DNA-binding domain profile. 25 102 IPR003340 GO:0003677
Accr5g00494 476 SMART B3_2 13 102 IPR003340 GO:0003677
Accr5g00494 476 SMART B3_2 364 464 IPR003340 GO:0003677
Accr5g00494 476 SMART B3_2 232 320 IPR003340 GO:0003677
Accr5g00494 476 CDD B3_DNA 230 317 IPR003340 GO:0003677
Accr5g00494 476 CDD B3_DNA 13 100 IPR003340 GO:0003677
Accr5g00494 476 SUPERFAMILY DNA-binding pseudobarrel domain 225 318 IPR015300 -
Accr5g00494 476 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 339 468 IPR044837 -
Accr5g00494 476 SUPERFAMILY DNA-binding pseudobarrel domain 357 463 IPR015300 -
Accr5g00494 476 SUPERFAMILY DNA-binding pseudobarrel domain 9 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00494 Accr-Chr5 25366616 25372729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00494 321 462 B3 DNA Binding Superfamily AT3G18990 26.712 7.04e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr5g00494 B3 2.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00494 - - pcin:129304822 609.372