Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00493 ATGGCTTCTCATTTTCATCCTCCTGGCCCTATCAATTTCTTCAAAATCATCTTGAAATCCAATCTTGAATCCATTAAGATTCCAAACAAATTTACAAGGAGATATGGAAGTGGTTTGTCAAACCCTGTGTTACTGAAGCCTCCGGATGGGAAAGAGTGGAAAGTACATCTGAAAACACATGATAATGAGGTTTGGTTTCAAGAGGGTTGGAATGAATTTGCTCGCTTTTACTCTCTAGATGAAGGACATTTGATTTTGTTCAAGTATGAAGGAACTTCTTGGTTTGATGTACACTTATTTGATATGAGTGCACTGGAAATAGACTATCCTTCTTCATCTAATGAGAATAATGTCAGAGATGATACAGTTGAAATCTCGGACGAGATGCCTTCAAACCGAAAGGCTAGGAACAAAACACTTTTGCCATCCTTTAGGCCTGATAAGAAAATGAGAATTCTACCAAAGTCGCATGTGGTTTCGGAAACAAATCATGGTCAATATCAAGGAACAGAGTTTCAGAAATCAACCAATGCAGTAGAATTGAAATTTCCTAAGAAGGAACCAGAAGGAGTGAGAATATCTAGTGCATGCTTGAATTCTGAGCATAGAAGGAAGAGAGCATTAACTACTATGGAAAAGATCAGAGCTATTAACAGTTCCAGTTCTTTCAAATCCAAATATCCGTTTTTCATGGTAATCATGCAGCCTTCATATGTCAGGCATAAATGTCACTTGGTGATGCCAACAAAATTTGCTAAAACACATTTGGAGAAAGAGCGTGGTGTTGTGCAACTTGAGGCACGAGATGGGAGAACTTGGACTGTCAAGTATAAGATTCCCACAATCAAAGATGGGTGGGAGAAGTTTGTAATGGAAAATGGTTTGAAAGTGGGTCAAGTTTGTATTTTTGAAATGATTGGTAGGGTGTTCAAAGTACATATTTTCGGAGACCAGGAAGAAGTTAAAAGCAGACAGAGGATTTACAATCTTGCAGAAGATCTGAAAGTTAAAAAGGAGCAGATCAGCAGTATGCAACATACTCCTTTTGAGAAGGCCATCTCTTTCAAATCTGAGTATCCTCATTTTATGGTTAAGATGACAAATGCTTACATTTGTGGCAAGTCAAACTTGCATGTGCCATCACATTTTGCAAGAAAACATCTTCATGACTGTACTGAGAGTATCAAACTTGTTGTACAAGATATAGTTTGGTCTGTTGAGTACGTATTTAGAATGATTACTCGAGGAATTGAAGCTCATGAGTTTTCCTCTGTTGGATGGAGGCGATTTCGCGAGGACAACAACTTGAAAGTAGGTGATATCTGTGTCTTTGAGCTCAACCCCGACATCAAACTTACATTTCAAGTAACAATTTTACGAGCCACTAAAACACCTAGCTCATCCTACAAACTCAGGTCAACCTGA 1425 0.3832 MASHFHPPGPINFFKIILKSNLESIKIPNKFTRRYGSGLSNPVLLKPPDGKEWKVHLKTHDNEVWFQEGWNEFARFYSLDEGHLILFKYEGTSWFDVHLFDMSALEIDYPSSSNENNVRDDTVEISDEMPSNRKARNKTLLPSFRPDKKMRILPKSHVVSETNHGQYQGTEFQKSTNAVELKFPKKEPEGVRISSACLNSEHRRKRALTTMEKIRAINSSSSFKSKYPFFMVIMQPSYVRHKCHLVMPTKFAKTHLEKERGVVQLEARDGRTWTVKYKIPTIKDGWEKFVMENGLKVGQVCIFEMIGRVFKVHIFGDQEEVKSRQRIYNLAEDLKVKKEQISSMQHTPFEKAISFKSEYPHFMVKMTNAYICGKSNLHVPSHFARKHLHDCTESIKLVVQDIVWSVEYVFRMITRGIEAHEFSSVGWRRFREDNNLKVGDICVFELNPDIKLTFQVTILRATKTPSSSYKLRST 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00493 474 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Accr5g00493 474 CDD B3_DNA 228 315 IPR003340 GO:0003677
Accr5g00493 474 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 337 466 IPR044837 -
Accr5g00493 474 Gene3D - 207 319 IPR015300 -
Accr5g00493 474 Gene3D - 342 463 IPR015300 -
Accr5g00493 474 Gene3D - 10 104 IPR015300 -
Accr5g00493 474 SUPERFAMILY DNA-binding pseudobarrel domain 8 110 IPR015300 -
Accr5g00493 474 ProSiteProfiles B3 DNA-binding domain profile. 362 462 IPR003340 GO:0003677
Accr5g00493 474 Pfam B3 DNA binding domain 13 101 IPR003340 GO:0003677
Accr5g00493 474 Pfam B3 DNA binding domain 362 461 IPR003340 GO:0003677
Accr5g00493 474 Pfam B3 DNA binding domain 230 315 IPR003340 GO:0003677
Accr5g00493 474 CDD B3_DNA 13 101 IPR003340 GO:0003677
Accr5g00493 474 CDD B3_DNA 360 460 IPR003340 GO:0003677
Accr5g00493 474 SUPERFAMILY DNA-binding pseudobarrel domain 355 461 IPR015300 -
Accr5g00493 474 ProSiteProfiles B3 DNA-binding domain profile. 230 318 IPR003340 GO:0003677
Accr5g00493 474 SMART B3_2 13 103 IPR003340 GO:0003677
Accr5g00493 474 SMART B3_2 230 318 IPR003340 GO:0003677
Accr5g00493 474 SMART B3_2 362 462 IPR003340 GO:0003677
Accr5g00493 474 SUPERFAMILY DNA-binding pseudobarrel domain 223 316 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00493 Accr-Chr5 25366616 25372729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00493 319 460 B3 DNA Binding Superfamily AT3G18990 26.712 8.34e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr5g00493 B3 2.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00493 - - pcin:129304822 609.757