LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g00492	ATGGCTTCTCATTTTCATCCTCCTGGCCCTATCAATTTCTTCAAAATCATCTTGAAATCCAATCTTGAATCCATTAAGATTCCAAACAAATTTACAAGGAGATATGGAAGTGGTTTGTCAAACCCTGTGTTACTGAAGCCTCCGGATGGGAAAGAGTGGAAAGTACATCTGAAAACACATGATAATGAGGTTTGGTTTCAAGAGGGTTGGAATGAATTTGCTCGCTTTTACTCTCTAGATGAAGGACATTTGATTTTGTTCAAGTATGAAGGAACTTCTTGGTTTGATGTACACTTATTTGATATGAGTGCACTGGAAATAGACTATCCTTCTTCATCTAATGAGAATAATGTCAGAGATGATACAGTTGAAATCTCGGACGAGATGCCTTCAAACCGAAAGGCTAGGAACAAAACACTTTTGCCATCCTTTAGGCCTGATAAGAAAATGAGAATTCTACCAAAGTCGCATGTGGTTTCGGAAACAAATCATGGTCAATATCAAGGAACAGAGTTTCAGAAATCAACCAATGCAGTAGAATTGAAATTTCCTAAGAAGGAACCAGAAGATACAGGAGTGAGAATATCTAGTGCATGCTTGAATTCTGAGCATAGAAGGAAGAGAGCATTAACTACTATGGAAAAGATCAGAGCTATTAACAGTTCCAGTTCTTTCAAATCCAAATATCCGTTTTTCATGGTAATCATGCAGCCTTCATATGTCAGGCATAAATGTCACTTGGTGATGCCAACAAAATTTGCTAAAACACATTTGGAGAAAGAGCGTGGTGTTGTGCAACTTGAGGCACGAGATGGGAGAACTTGGACTGTCAAGTATAAGATTCCCACAATCAAAGATGGGTGGGAGAAGTTTGTAATGGAAAATGGTTTGAAAGTGGGTCAAGTTTGTATTTTTGAAATGATTGGTAGGGTGTTCAAAGTACATATTTTCGGAGACCAGGAAGAAGTTAAAAGCAGACAGAGGATTTACAATCTTGCAGAAGATCTGAAAGTTAAAAAGGAGCAGATCAGCAGTATGCAACATACTCCTTTTGAGAAGGCCATCTCTTTCAAATCTGAGTATCCTCATTTTATGGTTAAGATGACAAATGCTTACATTTGTGGCAAGTCAAACTTGCATGTGCCATCACATTTTGCAAGAAAACATCTTCATGACTGTACTGAGAGTATCAAACTTGTTGTACAAGATATAGTTTGGTCTGTTGAGTACGTATTTAGAATGATTACTCGAGGAATTGAAGCTCATGAGTTTTCCTCTGTTGGATGGAGGCGATTTCGCGAGGACAACAACTTGAAAGTAGGTGATATCTGTGTCTTTGAGCTCAACCCCGACATCAAACTTACATTTCAAGTAACAATTTTACGAGCCACTAAAACACCTAGCTCATCCTACAAACTCAGGTCAACCTGA	1431	0.3829	MASHFHPPGPINFFKIILKSNLESIKIPNKFTRRYGSGLSNPVLLKPPDGKEWKVHLKTHDNEVWFQEGWNEFARFYSLDEGHLILFKYEGTSWFDVHLFDMSALEIDYPSSSNENNVRDDTVEISDEMPSNRKARNKTLLPSFRPDKKMRILPKSHVVSETNHGQYQGTEFQKSTNAVELKFPKKEPEDTGVRISSACLNSEHRRKRALTTMEKIRAINSSSSFKSKYPFFMVIMQPSYVRHKCHLVMPTKFAKTHLEKERGVVQLEARDGRTWTVKYKIPTIKDGWEKFVMENGLKVGQVCIFEMIGRVFKVHIFGDQEEVKSRQRIYNLAEDLKVKKEQISSMQHTPFEKAISFKSEYPHFMVKMTNAYICGKSNLHVPSHFARKHLHDCTESIKLVVQDIVWSVEYVFRMITRGIEAHEFSSVGWRRFREDNNLKVGDICVFELNPDIKLTFQVTILRATKTPSSSYKLRST	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g00492	476	ProSiteProfiles	B3 DNA-binding domain profile.	10	103	IPR003340	GO:0003677
	Accr5g00492	476	SUPERFAMILY	DNA-binding pseudobarrel domain	8	110	IPR015300	-
	Accr5g00492	476	SMART	B3_2	13	103	IPR003340	GO:0003677
	Accr5g00492	476	SMART	B3_2	364	464	IPR003340	GO:0003677
	Accr5g00492	476	SMART	B3_2	232	320	IPR003340	GO:0003677
	Accr5g00492	476	ProSiteProfiles	B3 DNA-binding domain profile.	364	464	IPR003340	GO:0003677
	Accr5g00492	476	Gene3D	-	10	104	IPR015300	-
	Accr5g00492	476	CDD	B3_DNA	362	462	IPR003340	GO:0003677
	Accr5g00492	476	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	339	468	IPR044837	-
	Accr5g00492	476	ProSiteProfiles	B3 DNA-binding domain profile.	232	320	IPR003340	GO:0003677
	Accr5g00492	476	CDD	B3_DNA	13	101	IPR003340	GO:0003677
	Accr5g00492	476	Gene3D	-	209	321	IPR015300	-
	Accr5g00492	476	Gene3D	-	344	465	IPR015300	-
	Accr5g00492	476	CDD	B3_DNA	230	317	IPR003340	GO:0003677
	Accr5g00492	476	SUPERFAMILY	DNA-binding pseudobarrel domain	225	318	IPR015300	-
	Accr5g00492	476	SUPERFAMILY	DNA-binding pseudobarrel domain	357	463	IPR015300	-
	Accr5g00492	476	Pfam	B3 DNA binding domain	13	101	IPR003340	GO:0003677
	Accr5g00492	476	Pfam	B3 DNA binding domain	232	317	IPR003340	GO:0003677
	Accr5g00492	476	Pfam	B3 DNA binding domain	364	463	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g00492	Accr-Chr5	25366616	25372729	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g00492	321	462	B3 DNA Binding Superfamily	AT3G18990	26.712	7.29e-09	55.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Accr5g00492		B3	2.7e-13	CL0405