Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00491 ATGGCTTCTCATTTTCATCCTCCTGGCCCTATCAATTTCTTCAAAATCATCTTGAAATCCAATCTTGAATCCATTAAGATTCCAAACAAATTTACAAGGAGATATGGAAGTGGTTTGTCAAACCCTGTGTTACTGAAGCCTCCGGATGGGAAAGAGTGGAAAGTACATCTGAAAACACATGATAATGAGGTTTGGTTTCAAGAGGGTTGGAATGAATTTGCTCGCTTTTACTCTCTAGATGAAGGACATTTGATTTTGTTCAAGTATGAAGGAACTTCTTGGTTTGATGTACACTTATTTGATATGAGTGCACTGGAAATAGACTATCCTTCTTCATCTAATGAGAATAATGTCAGAGATGATACAGTTGAAATCTCGGACGAGATGCCTTCAAACCGAAAGGCTAGGAACAAAACACTTTTGCCATCCTTTAGGCCTGATAAGAAAATGAGAATTCTACCAAAGTCGCATGTGGTTTCGGAAACAAATCATGGTCAATATCAAGGAACAGAGTTTCAGAAATCAACCAATGCAGTAGAATTGAAATTTCCTAAGAAGGAACCAGAAGAAGATACAGGAGTGAGAATATCTAGTGCATGCTTGAATTCTGAGCATAGAAGGAAGAGAGCATTAACTACTATGGAAAAGATCAGAGCTATTAACAGTTCCAGTTCTTTCAAATCCAAATATCCGTTTTTCATGGTAATCATGCAGCCTTCATATGTCAGGCATAAATGTCACTTGGTGATGCCAACAAAATTTGCTAAAACACATTTGGAGAAAGAGCGTGGTGTTGTGCAACTTGAGGCACGAGATGGGAGAACTTGGACTGTCAAGTATAAGATTCCCACAATCAAAGATGGGTGGGAGAAGTTTGTAATGGAAAATGGTTTGAAAGTGGGTCAAGTTTGTATTTTTGAAATGATTGGTAGGGTGTTCAAAGTACATATTTTCGGAGACCAGGAAGAAGTTAAAAGCAGACAGAGGATTTACAATCTTGCAGAAGATCTGAAAGTTAAAAAGGAGCAGATCAGCAGTATGCAACATACTCCTTTTGAGAAGGCCATCTCTTTCAAATCTGAGTATCCTCATTTTATGGTTAAGATGACAAATGCTTACATTTGTGGCAAGTCAAACTTGCATGTGCCATCACATTTTGCAAGAAAACATCTTCATGACTGTACTGAGAGTATCAAACTTGTTGTACAAGATATAGTTTGGTCTGTTGAGTACGTATTTAGAATGATTACTCGAGGAATTGAAGCTCATGAGTTTTCCTCTGTTGGATGGAGGCGATTTCGCGAGGACAACAACTTGAAAGTAGGTGATATCTGTGTCTTTGAGCTCAACCCCGACATCAAACTTACATTTCAAGTAACAATTTTACGAGCCACTAAAACACCTAGCTCATCCTACAAACTCAGGTCAACCTGA 1434 0.3828 MASHFHPPGPINFFKIILKSNLESIKIPNKFTRRYGSGLSNPVLLKPPDGKEWKVHLKTHDNEVWFQEGWNEFARFYSLDEGHLILFKYEGTSWFDVHLFDMSALEIDYPSSSNENNVRDDTVEISDEMPSNRKARNKTLLPSFRPDKKMRILPKSHVVSETNHGQYQGTEFQKSTNAVELKFPKKEPEEDTGVRISSACLNSEHRRKRALTTMEKIRAINSSSSFKSKYPFFMVIMQPSYVRHKCHLVMPTKFAKTHLEKERGVVQLEARDGRTWTVKYKIPTIKDGWEKFVMENGLKVGQVCIFEMIGRVFKVHIFGDQEEVKSRQRIYNLAEDLKVKKEQISSMQHTPFEKAISFKSEYPHFMVKMTNAYICGKSNLHVPSHFARKHLHDCTESIKLVVQDIVWSVEYVFRMITRGIEAHEFSSVGWRRFREDNNLKVGDICVFELNPDIKLTFQVTILRATKTPSSSYKLRST 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00491 477 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Accr5g00491 477 SUPERFAMILY DNA-binding pseudobarrel domain 8 110 IPR015300 -
Accr5g00491 477 Gene3D - 210 322 IPR015300 -
Accr5g00491 477 Gene3D - 345 466 IPR015300 -
Accr5g00491 477 Pfam B3 DNA binding domain 365 464 IPR003340 GO:0003677
Accr5g00491 477 Pfam B3 DNA binding domain 13 101 IPR003340 GO:0003677
Accr5g00491 477 Pfam B3 DNA binding domain 233 318 IPR003340 GO:0003677
Accr5g00491 477 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 340 469 IPR044837 -
Accr5g00491 477 ProSiteProfiles B3 DNA-binding domain profile. 233 321 IPR003340 GO:0003677
Accr5g00491 477 SMART B3_2 365 465 IPR003340 GO:0003677
Accr5g00491 477 SMART B3_2 13 103 IPR003340 GO:0003677
Accr5g00491 477 SMART B3_2 233 321 IPR003340 GO:0003677
Accr5g00491 477 CDD B3_DNA 363 463 IPR003340 GO:0003677
Accr5g00491 477 ProSiteProfiles B3 DNA-binding domain profile. 365 465 IPR003340 GO:0003677
Accr5g00491 477 CDD B3_DNA 13 101 IPR003340 GO:0003677
Accr5g00491 477 SUPERFAMILY DNA-binding pseudobarrel domain 226 319 IPR015300 -
Accr5g00491 477 SUPERFAMILY DNA-binding pseudobarrel domain 358 464 IPR015300 -
Accr5g00491 477 Gene3D - 10 104 IPR015300 -
Accr5g00491 477 CDD B3_DNA 231 318 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00491 Accr-Chr5 25366616 25372729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00491 322 463 B3 DNA Binding Superfamily AT3G18990 26.712 7.32e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr5g00491 B3 2.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00491 - - pcin:129304822 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g00491 5 25366616 25372729 Accr5g00491 5 25366616 25372729 CCT