Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00471 ATGTCTCGTTATTTCGTCAAATTCCTCATCGGAGAGTGGAAGACTACACTGCGAATTCCTCAGCTGTTTGTCTTCAGTTTTAGCCTCACACCTAAGGCAGTAACACTCATCAATGCTTCTTCAAAAAATCTATGGACGGTTGATATGGAGCAAGTAGAAGAAGATCCCACAGAATTATACTTCAAAAAGGGCTGGTCTAAATTTGTAAAAGACAACGCTTTAATGGCTGATGATTGCCTCATTTTCAAGTTTGATGGGGATTCAACTTTCAAAGTTGTTATCTGTGGCAAATCTTCCTGTGATAAAATGCTTGAGAGCCGGGTAAGAACACAAGTGAATCAGAAAAAATACCACAAACAAGGCCATAATAATAATGAAAAGAGAGCATCATCAACTCAAGATTGTGGAGAGAATCAGAAAGGAAAAGATCTTATTCATGAGATATCAGACAAAACGTGGGATGAGAAAGAAGAAGGAGAAGAAGTAAATGATGAGTTTGGTGATATTAATTCTGAACCTCATGATGCTATCATGAATATTGGGGAAGGAAGCAGCTTGGCCATTATTCCTTCATTCAGAATAAAGCTCAATGCCGTCTCAAAAAATGGAAAGGGTGCCGTGTGCATTCCAACAGATTTCTTCAGGAAGTACATGAGAAAGGAGAAACATGAGGTGGAGATGGAGACTGTGGAAGGAGTATGGAAAGTGGCATCACTTCCCCACCTGAAAAGAAGCCGAATGTTTGCAAGGTTCACCAGGGGTTGGTCAGAATTCGCTCGGCAGAATCGGTTGCAAGCCGGAGAGACTCTCCGTTTTAGAATGATTCGGAGAGGTCATTGTCCCAAGTTCACTGTTTCTAAGGAACAATAA 870 0.408 MSRYFVKFLIGEWKTTLRIPQLFVFSFSLTPKAVTLINASSKNLWTVDMEQVEEDPTELYFKKGWSKFVKDNALMADDCLIFKFDGDSTFKVVICGKSSCDKMLESRVRTQVNQKKYHKQGHNNNEKRASSTQDCGENQKGKDLIHEISDKTWDEKEEGEEVNDEFGDINSEPHDAIMNIGEGSSLAIIPSFRIKLNAVSKNGKGAVCIPTDFFRKYMRKEKHEVEMETVEGVWKVASLPHLKRSRMFARFTRGWSEFARQNRLQAGETLRFRMIRRGHCPKFTVSKEQ 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00471 289 Pfam B3 DNA binding domain 200 285 IPR003340 GO:0003677
Accr5g00471 289 Pfam B3 DNA binding domain 16 96 IPR003340 GO:0003677
Accr5g00471 289 MobiDBLite consensus disorder prediction 139 156 - -
Accr5g00471 289 CDD B3_DNA 3 95 IPR003340 GO:0003677
Accr5g00471 289 SMART B3_2 5 98 IPR003340 GO:0003677
Accr5g00471 289 SMART B3_2 192 289 IPR003340 GO:0003677
Accr5g00471 289 CDD B3_DNA 190 287 IPR003340 GO:0003677
Accr5g00471 289 PANTHER B3 DOMAIN-CONTAINING 5 277 - -
Accr5g00471 289 SUPERFAMILY DNA-binding pseudobarrel domain 190 280 IPR015300 -
Accr5g00471 289 Gene3D - 179 287 IPR015300 -
Accr5g00471 289 ProSiteProfiles B3 DNA-binding domain profile. 2 98 IPR003340 GO:0003677
Accr5g00471 289 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
Accr5g00471 289 Gene3D - 1 100 IPR015300 -
Accr5g00471 289 ProSiteProfiles B3 DNA-binding domain profile. 192 289 IPR003340 GO:0003677
Accr5g00471 289 MobiDBLite consensus disorder prediction 112 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00471 Accr-Chr5 24784546 24786592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00471 2 283 REM Transcription Factor Family AT4G31640 22.648 8.46e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr5g00471 B3 9.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00471 - - pcin:129290266 249.98