LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g00454	ATGTGCAGCAGCATCCTTGGCTCAATCATGGACAACAATTATCATCAGGGCGATTTAACTGATATATTCCTTGCAAGTAGCGGCCGAGGTGGAGGTGGTGGTGGTTCACATGGCACTTCTTCTTCTTCAACATCTGAATTAGCTCCCCATGATCTCTCTTCTTCTTCATCGGAAAGTTGGCACCACCACCACCATCAGCACCAGCAGCAGCAGCAACACCAACAGATGAATTTCTCTTCTGTAATGATGGAAGATTCTCTGAGAGCCGCCAACTTCTTCGGCGATCCCTTCTCAAGCATTCGAGATCCCTTTCTTCAAGACCTTGAATTCCACTTACCTTCTTCTTACTTCAGTTCTGCTCCTAATAATTCTGCCATGGAAGGTGCATCTCCCGGTTTTTCTGCTACTTCTTCTGTTGTTTTGTCGCATCATGATAATATGAGAATTAGGCCTCCTCCTTTAGCATCAGGTAACACCACCACCAGCATATTCTCCAACATGATTCAGATCTCTCCCAACGCCGCCGTCGCCAAGTTACCAGTTTCGCTGTGTGATTCTCCTCCGGTGAATATGGCCGCCGGGAATTCTTCGTCTTCATCGTCGTTGCCATTGTTGTCTCCGAGGGGAATTGAGCCTTCTTCTTCCTCTTCTTTGGTTTCTGCCGGCAACATGAATATCACTGTGGACAACGCAGCAGTGCAGATCTCGTCTCCAAGGAATCCGGGTCTCAAGCGAAGAAAGAGCCAGGCGAAGAAGGTGGTGTGTATACCTGCACCAGCAGCTGCAAATAGCAGACCAAGTAGTGGGGAGGTAGTTCCTTCTGATTTGTGGGCTTGGAGAAAGTACGGTCAGAAACCCATCAAAGGTTCTCCTTATCCAAGGGGTTACTACAGATGTAGCAGCTCCAAGGGTTGTTCAGCAAGAAAACAAGTAGAGAGAAGCAGGACAGACCCAAACATGCTGGTCATCACTTACACCTCAGAGCACAACCATCCATGGCCAACTCAACGAAACGCTCTCGCCGGCTCTTCAAGGTCTCAGCCTTCCAAAAATAACAACAACAATGCTCTCAAGAACAACCACAACAACAACGCCGATAATCAGGCTTTGATTCGGCCGCCAAAGCTAAAGGAGGAGGAGGAGGATCATAAAGAGCAGCAGCAGAGAGGGAAAATTAGCTCATCATCATCAGTGAAGGAGGAGATGGAAATGGACGAGAATAATGATCAAGAAGAGCTTGAGAATATGATGATGGAAGATGACGATAATAATGGATCTGAAGCAGGAGGAGCGGGATACAAGCCATGTATGTTGGATCAGAGCAATAATAATAATCAGACTTCTGAGGATTTCTTTGCTGAATTGGGAGAGATAGAAGCTGACCCACTGAATCTCTTGTTCAGTCAAGCAGGTTACAATGAAGAGAATCATCATCATCATCACCAGAGAGAATCCAAAGCTCTAGATCCTTTTGGTAATCTCTTTGTTGACTGGTCATCATCATCTTCTGCATCAGCATCAGCACATCATATTCACAACACCACCACCACTTCATTTGAAGAACCAAAAGACAGGGTTATAACAAGACCTTGA	1593	0.4614	MCSSILGSIMDNNYHQGDLTDIFLASSGRGGGGGGSHGTSSSSTSELAPHDLSSSSSESWHHHHHQHQQQQQHQQMNFSSVMMEDSLRAANFFGDPFSSIRDPFLQDLEFHLPSSYFSSAPNNSAMEGASPGFSATSSVVLSHHDNMRIRPPPLASGNTTTSIFSNMIQISPNAAVAKLPVSLCDSPPVNMAAGNSSSSSSLPLLSPRGIEPSSSSSLVSAGNMNITVDNAAVQISSPRNPGLKRRKSQAKKVVCIPAPAAANSRPSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQPSKNNNNNALKNNHNNNADNQALIRPPKLKEEEEDHKEQQQRGKISSSSSVKEEMEMDENNDQEELENMMMEDDDNNGSEAGGAGYKPCMLDQSNNNNQTSEDFFAELGEIEADPLNLLFSQAGYNEENHHHHHQRESKALDPFGNLFVDWSSSSSASASAHHIHNTTTTSFEEPKDRVITRP	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g00454	530	MobiDBLite	consensus disorder prediction	516	530	-	-
	Accr5g00454	530	MobiDBLite	consensus disorder prediction	372	389	-	-
	Accr5g00454	530	FunFam	probable WRKY transcription factor 14	246	327	-	-
	Accr5g00454	530	MobiDBLite	consensus disorder prediction	317	369	-	-
	Accr5g00454	530	Pfam	WRKY DNA -binding domain	275	332	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g00454	530	Coils	Coil	399	419	-	-
	Accr5g00454	530	MobiDBLite	consensus disorder prediction	502	530	-	-
	Accr5g00454	530	MobiDBLite	consensus disorder prediction	29	76	-	-
	Accr5g00454	530	Gene3D	WRKY domain	246	327	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g00454	530	ProSiteProfiles	WRKY domain profile.	268	334	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g00454	530	MobiDBLite	consensus disorder prediction	298	408	-	-
	Accr5g00454	530	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	64	467	IPR044810	GO:0003700
	Accr5g00454	530	MobiDBLite	consensus disorder prediction	33	55	-	-
	Accr5g00454	530	SUPERFAMILY	WRKY DNA-binding domain	271	334	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Accr5g00454	530	SMART	WRKY_cls	273	333	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g00454	Accr-Chr5	24254400	24257847	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g00454	1	476	WRKY Transcription Factor Family	AT2G34830	40.396	1.53e-82	262

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Accr5g00454		WRKY	3.1e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g00454	-		-	pcin:129305007	622.468