Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00400 ATGAAAGCTTTTGGCTTATTCATGCGCATAGCCCTTGTGTTATTTGTTCCCTTATTTCTACTTTGCTCTTCTGTTTCCGGGTATTCATGGAATGAGGTCAAGCTCTGGTGCAACCAAACCCCATATCCTCAGCCATGTGAATACTTCCTCAGTAACAATCCCATTCACAGCCAAAAGATCATCAAACACAAACATGATTTTCTCAATCTTTCGCTTCAACTAGCCCAAGAGAGAGCCCTAAAAGGTCATGCCAACACTCTTTCATTAGGCCCCAAGTGTAGGAACTCGCGTGAGAAAGCTGCATGGGCTGATTGCGTCGAGCTTTACGAGCAAGCCATCCATAAGCTCAACACAACCCTAGATCCCACCAACACCATGTTCTCTCGGGCAGATGCTCAAACATGGCTCAGCACAGCTCTCACCAACCTAGAGACGTGCCGAGCCGGGTTTTATGAGCTCGGGGTTCAAGACTACTTGTTGCCTTTGATGTCCAACAACGTCACGAAGTTGTTGAGCAACACTTTGGCTTTGAACAAAGTTGAATACAAAGAGCCAAGTAATAAAGATGGGTTTCCAACATGGGTTAAGCCTGGGGATAGGAAGTTGTTGCAGTCTTCTTCTTCATCTTCTAAGGCCAACGTGGTTGTGGCTAAAGATGGATCTGGCAAATACACAACTATAAGTGCAGCTATAAATGCAGCGCCACAGAGTAGTAGTGGGAGATATGTGATATACGTGAAGGCTGGAGTTTACAATGAACAGGTAGAGATAAAGGCAAAGAATATAATGTTAGTTGGAGATGGTATTGGGAAGACTATAATAACAGGAAGCAAAAGTGTTGGAGGAGGCACTACAACCTTCCGGTCAGCCACTGTTGGTGTGGTTGGAGATGGATTTATTGCTCAAGGCATCACATTTAGAAACACTGCTGGCGCTTCAAACCATCAAGCTGTCGCATTACGTGCTGGTTCAGATTTATCAGTCTTTTACAGATGTAGCTTTGAAGGATACCAAGACACTTTATATGTGCACTCCCAGCGGCAATTCTACAGAGAATGCGACATTTACGGCACAGTTGACTTTATCTTTGGTAACGCAGCAGTGGTTTTCCAAAACTGCAACCTTTTTGCAAGAAACCCTCCCAACAAAGTTAACACAATCACCGCCCAAGGTCGAACTGATCCAAACCAAAACACAGGAATTTCTATTCACAATTGTAGGGTTACAGCTGCTTCAGATTTAAAGCCAGTTCAAAGCTCGGTGAAGACCTATCTTGGAAGGCCATGGCAACAATATTCTCGTACAGTTTTCATGAAGACTTTCTTGGACAGTTTGATAAACCAGGCTGGTTGGTTGGAATGGAGTGGGAACTTTGCCTTAAACACTTTGTACTATGGGGAGTACATGAACAATGGTCCAGGTTCTTCCACTTCGAATCGTGTTAAGTGGTCAGGTTACCACGTAATCACCAGTGCTTCAGAAGCTTCAAAGTTCACTGTTGCAAACTTCATTGGAGGAAATTCATGGCTTCCAGCCACCGATGTTCCTTTCACTTCTACTTTATAG 1566 0.4406 MKAFGLFMRIALVLFVPLFLLCSSVSGYSWNEVKLWCNQTPYPQPCEYFLSNNPIHSQKIIKHKHDFLNLSLQLAQERALKGHANTLSLGPKCRNSREKAAWADCVELYEQAIHKLNTTLDPTNTMFSRADAQTWLSTALTNLETCRAGFYELGVQDYLLPLMSNNVTKLLSNTLALNKVEYKEPSNKDGFPTWVKPGDRKLLQSSSSSSKANVVVAKDGSGKYTTISAAINAAPQSSSGRYVIYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVGVVGDGFIAQGITFRNTAGASNHQAVALRAGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLKPVQSSVKTYLGRPWQQYSRTVFMKTFLDSLINQAGWLEWSGNFALNTLYYGEYMNNGPGSSTSNRVKWSGYHVITSASEASKFTVANFIGGNSWLPATDVPFTSTL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00400 521 Pfam Pectinesterase 213 507 IPR000070 GO:0030599|GO:0042545
Accr5g00400 521 NCBIfam pectinesterase inhibitor domain 13 179 IPR006501 GO:0004857
Accr5g00400 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Accr5g00400 521 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Accr5g00400 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 180 IPR035513 -
Accr5g00400 521 Pfam Plant invertase/pectin methylesterase inhibitor 32 177 IPR006501 GO:0004857
Accr5g00400 521 SMART complete 246 424 IPR006633 -
Accr5g00400 521 ProSitePatterns Pectinesterase signature 1. 238 257 IPR018040 -
Accr5g00400 521 SUPERFAMILY Pectin lyase-like 208 520 IPR011050 -
Accr5g00400 521 SMART PMEI_2 28 177 IPR006501 GO:0004857
Accr5g00400 521 FunFam Pectinesterase 207 521 - -
Accr5g00400 521 PANTHER PECTINESTERASE 16 513 - -
Accr5g00400 521 Gene3D - 207 521 IPR012334 -
Accr5g00400 521 CDD PMEI-like_3 35 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00400 Accr-Chr5 20219554 20221411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00400 6 521 Carbohydrate Esterase AT2G45220 67.954 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00400 K01051 - gmx:100783964 884.019